BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0560400 Os10g0560400|AK109732
(297 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57660.1 | chr5:23355573-23356729 FORWARD LENGTH=356 57 1e-08
AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407 55 4e-08
AT3G02380.1 | chr3:487438-488624 REVERSE LENGTH=348 55 6e-08
AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295 55 6e-08
AT5G15840.1 | chr5:5171343-5172697 REVERSE LENGTH=374 55 6e-08
AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356 54 1e-07
>AT5G57660.1 | chr5:23355573-23356729 FORWARD LENGTH=356
Length = 355
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 219 AMDREAKVMXXXXXXXXXXXXXQIRYASRKAYAEMRPRVKGRFAKVPDGELD 270
+MDREA+V+ IRYASRKAYAE RPR+KGRFAK + E D
Sbjct: 282 SMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETEND 333
>AT5G24930.1 | chr5:8589325-8590949 FORWARD LENGTH=407
Length = 406
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 31/48 (64%)
Query: 219 AMDREAKVMXXXXXXXXXXXXXQIRYASRKAYAEMRPRVKGRFAKVPD 266
+ +REA+VM IRYASRKAYAEMRPR+KGRFAK D
Sbjct: 336 SAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 383
>AT3G02380.1 | chr3:487438-488624 REVERSE LENGTH=348
Length = 347
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 220 MDREAKVMXXXXXXXXXXXXXQIRYASRKAYAEMRPRVKGRFAK 263
M+REA+V+ IRYASRKAYAE+RPR+KGRFAK
Sbjct: 276 MEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAK 319
>AT2G24790.1 | chr2:10566959-10567946 FORWARD LENGTH=295
Length = 294
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 30/47 (63%)
Query: 221 DREAKVMXXXXXXXXXXXXXQIRYASRKAYAEMRPRVKGRFAKVPDG 267
+REA+V+ IRYASRKAYAEMRPR+KGRFAK D
Sbjct: 228 EREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDS 274
>AT5G15840.1 | chr5:5171343-5172697 REVERSE LENGTH=374
Length = 373
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 29/44 (65%)
Query: 220 MDREAKVMXXXXXXXXXXXXXQIRYASRKAYAEMRPRVKGRFAK 263
MDREA+V+ IRYASRKAYAE+RPRV GRFAK
Sbjct: 304 MDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAK 347
>AT5G15850.1 | chr5:5176297-5177473 REVERSE LENGTH=356
Length = 355
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 29/46 (63%)
Query: 221 DREAKVMXXXXXXXXXXXXXQIRYASRKAYAEMRPRVKGRFAKVPD 266
DREA+V+ IRYASRKAYAE RPR+KGRFAK D
Sbjct: 285 DREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKD 330
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,125,826
Number of extensions: 131792
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 6
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)