BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0560400 Os10g0560400|AK109732
(297 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0560400 Similar to CONSTANS-like protein CO9 (Fragment) 338 2e-93
Os07g0261200 97 2e-20
>Os10g0560400 Similar to CONSTANS-like protein CO9 (Fragment)
Length = 297
Score = 338 bits (868), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 180/276 (65%), Positives = 180/276 (65%)
Query: 22 LLHQRRXXXXXXXXXXVRCGIAADLNRGFPAIFQGVGVEETAVEGDGGAQPAAGLQEFQF 81
LLHQRR VRCGIAADLNRGFPAIFQGVGVEETAVEGDGGAQPAAGLQEFQF
Sbjct: 22 LLHQRRGGGGGGGGGGVRCGIAADLNRGFPAIFQGVGVEETAVEGDGGAQPAAGLQEFQF 81
Query: 82 FGHDDHDSVAWLFNDPAPPGGTDHQLHRQTAPMAVGNGXXXXXXXXXXXXXXXXXPGHGL 141
FGHDDHDSVAWLFNDPAPPGGTDHQLHRQTAPMAVGNG PGHGL
Sbjct: 82 FGHDDHDSVAWLFNDPAPPGGTDHQLHRQTAPMAVGNGAAAAQQRQAFDAYAQYQPGHGL 141
Query: 142 TFDVPLTRXXXXXXXXXXXXXXXXXXXXXRNPATSSSTIMSFCGSTFTDAVSSIPKDHXX 201
TFDVPLTR RNPATSSSTIMSFCGSTFTDAVSSIPKDH
Sbjct: 142 TFDVPLTRGEAAAAVLEASLGLGGAGAGGRNPATSSSTIMSFCGSTFTDAVSSIPKDHAA 201
Query: 202 XXXXXXXXXXXXXXXDPAMDREAKVMXXXXXXXXXXXXXQIRYASRKAYAEMRPRVKGRF 261
DPAMDREAKVM QIRYASRKAYAEMRPRVKGRF
Sbjct: 202 AAAVVANGGLSGGGGDPAMDREAKVMRYKEKRKRRRYEKQIRYASRKAYAEMRPRVKGRF 261
Query: 262 AKVPDGELDXXXXXXXXXXXXXXXXXXRLDLGWFRS 297
AKVPDGELD RLDLGWFRS
Sbjct: 262 AKVPDGELDGATPPPPSSAAGGGYEPGRLDLGWFRS 297
>Os07g0261200
Length = 287
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 110/255 (43%), Gaps = 35/255 (13%)
Query: 49 GFPAIFQGVGVEETAVEGDGGAQPAAGLQEFQFFGHDDH----DSVAWLFNDPAPPGGTD 104
GFP +F +A +G G PA + EFQFFG+D +SVAWLF+D PP
Sbjct: 61 GFPFVFP-----PSACQGIGA--PAPPVHEFQFFGNDGGGDDGESVAWLFDDYPPPSPVA 113
Query: 105 HQ--LHRQTAPMAVGNGXXXXXXXXXXXXXXXXXPGHGLTFDVPLTRXXXXXXXXXXXXX 162
+H + P +G GLTFDV L
Sbjct: 114 AAAGMHHRQPPY---DGVVAPPSLFRRNTGAG-----GLTFDVSLGERPDLDAGLGLGGG 165
Query: 163 XXXXXXXXRNPATSSSTIMSFCGSTFTDAVSSIPKDHXXXXXXXXXXXXXXXXXDPAMDR 222
A +S+TIMS+CGSTFTDA SS+PK+ ++R
Sbjct: 166 GGRHAE-----AAASATIMSYCGSTFTDAASSMPKEMVAAMADDGESLNPNTVVGAMVER 220
Query: 223 EAKVMXXXXXXXXXXXXXQIRYASRKAYAEMRPRVKGRFAKVPDGELDXXXXXXXXXXXX 282
EAK+M QIRYASRKAYAEMRPRV+GRFAK PD E
Sbjct: 221 EAKLMRYKEKRKKRCYEKQIRYASRKAYAEMRPRVRGRFAKEPDQE--------AVAPPS 272
Query: 283 XXXXXXRLDLG-WFR 296
RL+LG WFR
Sbjct: 273 TYVDPSRLELGQWFR 287
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,251,441
Number of extensions: 264915
Number of successful extensions: 476
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)