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Os10g0550900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proline dehydrogenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0349) R2 : 0.645
β1 : 1.81 (0.161) R2dD : 0.19 R2D : 0.343
β2 : 1.15 (0.0854) R2dC : 0.148 R2C : 0.157
β3 : 0.37 (0.134) R2dE : 0.00781 R2E : -0.00197
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.15 (0.72) R2dD*E : 0.112 R2D*E : 0.288
γ1 : 0.314 (0.0783) R2dN8 : 0.0219 R2N8 : 0.0157
σ : 0.602
deviance : 166.86
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C
peak time of C : 7.05
E
wheather : temperature
threshold : 22.92
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.3 0.597 12.9 1.84 1.14 0.335 -1.47 -6.35 0.316 7.12 23.13 11 -- --
184.36 0.637 12.8 2.84 1.08 -0.502 -1.7 -- 0.598 7.97 26.95 27 -- --
166.86 0.602 12.9 1.81 1.15 0.37 -- -6.15 0.314 7.05 22.92 10 -- --
191.85 0.645 12.8 2.76 1.1 -0.353 -- -- 0.59 7.53 26.8 34 -- --
232.56 0.71 12.9 1.9 -- 0.0233 -- -6.31 0.389 -- 23.2 9 -- --
188.01 0.643 12.8 2.76 1.14 -- -1.49 -- 0.59 7.54 -- -- -- --
193.55 0.652 12.8 2.72 1.15 -- -- -- 0.59 7.19 -- -- -- --
237.2 0.717 12.8 2.9 -- -0.952 -- -- 0.699 -- 24.5 392 -- --
379.16 0.907 12.9 -- 1.36 0.837 -- -- 0.134 6.09 20.71 9 -- --
263.77 0.759 12.8 2.74 -- -- -- -- 0.61 -- -- -- -- --
389.08 0.923 12.8 -- 1.18 -- -- -- 0.287 7.04 -- -- -- --
453.92 0.992 12.8 -- -- -0.539 -- -- 0.335 -- 24.93 374 -- --
462.51 1 12.9 -- -- -- -- -- 0.306 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.12 humidity 80 14400 < th dose independent rect. 21 3
3 152.65 humidity 80 14400 > th dose independent rect. 21 4
33 155.30 wind 7 14400 > th dose dependent rect. 13 4
40 155.83 wind 7 14400 > th dose dependent rect. 15 1
46 156.30 humidity 80 14400 < th dose dependent rect. 22 1
49 156.44 wind 7 14400 > th dose dependent rect. 13 1
50 156.49 humidity 80 14400 < th dose dependent rect. 21 3
59 156.94 humidity 90 14400 < th dose dependent rect. 4 1
65 157.06 wind 9 14400 < th dose independent rect. 13 2
75 157.59 humidity 90 14400 < th dose dependent rect. 1 4
82 157.79 wind 9 14400 > th dose independent rect. 13 2
93 158.10 wind 9 14400 > th dose independent rect. 13 8
102 158.45 humidity 90 14400 < th dose dependent rect. 23 6
103 158.49 wind 9 14400 > th dose independent rect. 13 6
173 159.65 wind 7 43200 < th dose independent rect. 16 1
189 159.88 wind 9 14400 > th dose independent rect. 13 18
213 160.12 wind 7 14400 > th dose dependent rect. 5 14
220 160.20 wind 7 14400 > th dose dependent rect. 5 12
246 160.36 wind 9 14400 > th dose dependent rect. 18 21
252 160.45 wind 7 14400 > th dose dependent sin 23 NA
257 160.48 wind 3 43200 < th dose dependent rect. 21 1
264 160.60 atmosphere 1005 90 < th dose dependent rect. 9 6
267 160.61 wind 9 14400 > th dose dependent rect. 20 19
270 160.65 wind 1 43200 < th dose dependent rect. 16 11
289 160.82 wind 3 14400 < th dose independent rect. 20 1
292 160.83 atmosphere 1000 10 < th dose independent rect. 9 7
330 161.09 wind 9 14400 > th dose independent rect. 18 22
332 161.10 wind 1 43200 < th dose dependent rect. 20 5
342 161.17 wind 9 14400 > th dose independent rect. 20 20
370 161.41 wind 9 14400 > th dose independent rect. 5 16
372 161.42 wind 9 14400 > th dose independent rect. 3 18
385 161.47 wind 9 14400 < th dose independent rect. 13 20
391 161.50 wind 9 14400 > th dose independent sin 21 NA
394 161.51 wind 9 14400 < th dose independent rect. 13 12
426 161.61 wind 1 43200 < th dose dependent rect. 23 2
444 161.69 wind 9 14400 > th dose dependent rect. 13 18
459 161.75 temperature 25 30 > th dose dependent rect. 19 21
490 161.91 temperature 25 90 > th dose dependent rect. 8 7
493 161.92 humidity 80 14400 > th dose independent rect. 3 2
512 162.01 wind 1 43200 < th dose independent rect. 18 8
515 162.01 temperature 25 90 > th dose dependent sin 4 NA
531 162.13 wind 1 43200 > th dose independent rect. 10 1
532 162.13 humidity 80 14400 < th dose independent rect. 3 1
539 162.16 wind 3 14400 > th dose independent rect. 20 1
548 162.20 atmosphere 1005 10 < th dose dependent rect. 9 7
558 162.23 wind 9 14400 < th dose independent rect. 20 20
584 162.33 wind 1 43200 < th dose independent rect. 20 5
588 162.35 wind 9 14400 < th dose independent rect. 18 22
600 162.40 wind 7 14400 > th dose independent rect. 5 13
606 162.41 temperature 25 270 > th dose dependent sin 7 NA
625 162.50 temperature 25 270 > th dose dependent rect. 6 7
716 162.71 temperature 25 270 > th dose dependent rect. 23 14
735 162.77 wind 9 14400 > th dose independent rect. 5 23
755 162.81 wind 9 14400 > th dose independent no NA NA
796 162.89 wind 1 43200 > th dose independent rect. 18 8
809 162.91 temperature 25 90 > th dose dependent rect. 22 17
817 162.94 wind 1 43200 < th dose independent rect. 10 1
856 163.01 temperature 25 270 > th dose dependent rect. 9 1
875 163.06 wind 7 14400 < th dose independent rect. 5 13
890 163.13 wind 9 14400 < th dose independent sin 21 NA
925 163.21 wind 9 14400 < th dose independent rect. 5 11
941 163.23 wind 9 14400 < th dose independent rect. 5 16
962 163.27 wind 9 14400 < th dose independent rect. 24 16
995 163.33 wind 9 14400 > th dose independent rect. 23 17