BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0550900 Os10g0550900|AK121010
         (490 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0550900  Proline dehydrogenase domain containing protein     716   0.0  

>Os10g0550900 Proline dehydrogenase domain containing protein
          Length = 490

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/432 (84%), Positives = 365/432 (84%)

Query: 59  FGDTERLFAGERSTSLVRTLAVLQALSVGPLVDVATAALRSPXXXXXXXXXXXXXXXXYQ 118
           FGDTERLFAGERSTSLVRTLAVLQALSVGPLVDVATAALRSP                YQ
Sbjct: 59  FGDTERLFAGERSTSLVRTLAVLQALSVGPLVDVATAALRSPAVAGSAAGRAAARATAYQ 118

Query: 119 HFCXXXXXXXXXXXVRRLWRGGMGGILDYGIEDAEDGPACDRNAAGFLAAIDVAAALPPG 178
           HFC           VRRLWRGGMGGILDYGIEDAEDGPACDRNAAGFLAAIDVAAALPPG
Sbjct: 119 HFCAGETAEEAAAAVRRLWRGGMGGILDYGIEDAEDGPACDRNAAGFLAAIDVAAALPPG 178

Query: 179 SASVCIKITALCPVALLEKASDLLRWQQKHPATKLPWKVHGFPVLCVSSXXXXXXXXXXX 238
           SASVCIKITALCPVALLEKASDLLRWQQKHPATKLPWKVHGFPVLCVSS           
Sbjct: 179 SASVCIKITALCPVALLEKASDLLRWQQKHPATKLPWKVHGFPVLCVSSPLYLTAAEPPA 238

Query: 239 XXXXXXXXXXMAHGRLLAIGERCAEYDIPLLVDAEYATVQPAIDYFTFAGALAFNGGGRP 298
                     MAHGRLLAIGERCAEYDIPLLVDAEYATVQPAIDYFTFAGALAFNGGGRP
Sbjct: 239 LEAEEERELEMAHGRLLAIGERCAEYDIPLLVDAEYATVQPAIDYFTFAGALAFNGGGRP 298

Query: 299 IVHGTVQAYLRDARDRLEAMARAAQGERVCLALKLVRGAYLAREARLAASLGVPSPVHRS 358
           IVHGTVQAYLRDARDRLEAMARAAQGERVCLALKLVRGAYLAREARLAASLGVPSPVHRS
Sbjct: 299 IVHGTVQAYLRDARDRLEAMARAAQGERVCLALKLVRGAYLAREARLAASLGVPSPVHRS 358

Query: 359 IQDTHDCYNGCAAFLLDRVRRGAAAVTLATHNVESGQXXXXXXXXXXXXXXXXXXXQFAQ 418
           IQDTHDCYNGCAAFLLDRVRRGAAAVTLATHNVESGQ                   QFAQ
Sbjct: 359 IQDTHDCYNGCAAFLLDRVRRGAAAVTLATHNVESGQLAAARALELGIGGGGDRGLQFAQ 418

Query: 419 LMGMADGLSLGLRNAGFQVSKYLPYGPVEQIIPYLIRRAEENRGLLSSSSFDRQLLRKEL 478
           LMGMADGLSLGLRNAGFQVSKYLPYGPVEQIIPYLIRRAEENRGLLSSSSFDRQLLRKEL
Sbjct: 419 LMGMADGLSLGLRNAGFQVSKYLPYGPVEQIIPYLIRRAEENRGLLSSSSFDRQLLRKEL 478

Query: 479 VRRFKAAMLGRE 490
           VRRFKAAMLGRE
Sbjct: 479 VRRFKAAMLGRE 490



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,647,803
Number of extensions: 465858
Number of successful extensions: 1444
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1441
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 385
Effective length of database: 11,553,331
Effective search space: 4448032435
Effective search space used: 4448032435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)