Os10g0545800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CcmE/CycJ protein family protein.
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Os10g0545800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CcmE/CycJ protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.87 | 0.338 | 11.4 | 0.352 | 0.323 | 1.34 | 0.382 | 0.755 | 0.0334 | 11 | 0.3601 | 1514 | -- | -- |
| 51.81 | 0.335 | 11.4 | 0.397 | 0.38 | 1.21 | 0.306 | -- | 0.0289 | 11.5 | 0.5181 | 1557 | -- | -- |
| 52.21 | 0.337 | 11.4 | 0.414 | 0.359 | 1.23 | -- | 0.1 | 0.0339 | 11.1 | 0.4877 | 1534 | -- | -- |
| 52.17 | 0.336 | 11.4 | 0.42 | 0.361 | 1.21 | -- | -- | 0.0384 | 11.2 | 0.5275 | 1548 | -- | -- |
| 55.57 | 0.347 | 11.4 | 0.376 | -- | 0.967 | -- | 0.188 | 0.0363 | -- | 0.2988 | 2804 | -- | -- |
| 64.3 | 0.376 | 11.4 | 0.144 | 0.15 | -- | 0.297 | -- | -0.0898 | 9.69 | -- | -- | -- | -- |
| 64.53 | 0.376 | 11.4 | 0.153 | 0.158 | -- | -- | -- | -0.0904 | 8.64 | -- | -- | -- | -- |
| 55.49 | 0.347 | 11.4 | 0.385 | -- | 0.891 | -- | -- | 0.0468 | -- | 0.5286 | 2778 | -- | -- |
| 56.28 | 0.349 | 11.4 | -- | 0.322 | 0.984 | -- | -- | 0.0267 | 11 | 0.6016 | 1550 | -- | -- |
| 65.93 | 0.379 | 11.4 | 0.153 | -- | -- | -- | -- | -0.089 | -- | -- | -- | -- | -- |
| 65.15 | 0.378 | 11.4 | -- | 0.158 | -- | -- | -- | -0.107 | 8.56 | -- | -- | -- | -- |
| 58.86 | 0.357 | 11.4 | -- | -- | 0.702 | -- | -- | 0.0033 | -- | 0.6102 | 2751 | -- | -- |
| 66.55 | 0.381 | 11.4 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 2 | 51.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 9 | 51.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 41 | 51.92 | radiation | 1 | 1440 | < th | dose dependent | sin | 18 | NA |
| 60 | 52.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 95 | 52.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 96 | 52.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 101 | 52.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 103 | 52.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 143 | 52.31 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 170 | 52.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 214 | 52.46 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 249 | 52.59 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 278 | 52.70 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 292 | 52.81 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 12 |
| 327 | 53.12 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 328 | 53.12 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 367 | 53.25 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 6 |
| 396 | 53.33 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 398 | 53.33 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 419 | 53.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 430 | 53.48 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 437 | 53.50 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 442 | 53.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 444 | 53.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 448 | 53.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 462 | 53.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 471 | 53.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 476 | 53.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 518 | 53.63 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 519 | 53.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 537 | 53.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 541 | 53.75 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 1 |
| 552 | 53.78 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 571 | 53.83 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 585 | 53.90 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 589 | 53.92 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 592 | 53.93 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 686 | 54.18 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 720 | 54.26 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 8 |
| 726 | 54.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 819 | 54.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 877 | 54.59 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |