BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0545800 Os10g0545800|AK103222
         (267 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51790.1  | chr3:19209893-19210663 REVERSE LENGTH=257          259   1e-69

>AT3G51790.1 | chr3:19209893-19210663 REVERSE LENGTH=257
          Length = 256

 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 116/163 (71%), Positives = 145/163 (88%), Gaps = 1/163 (0%)

Query: 67  DIGARARQLQSRRLWTYALTFGCAAGFVVTVLATFQDQLVFYLTPTDALARYATDRSKSR 126
           DIGA+ARQ+Q+RRLWTYALTF C AGFVV VL  FQDQLVFYLTP+DA+ ++A + +K++
Sbjct: 71  DIGAKARQMQNRRLWTYALTFSCIAGFVVIVLNQFQDQLVFYLTPSDAMEKFAENPTKNK 130

Query: 127 VRLGGLVLEGSVAHPSASSSEIEFVVTDLITDVLVRYEGALPDLFREGHSVVVEGFLKPF 186
            RLGGLVLEGSVA P+AS  E+EFV+TDLITD+LVRY+G+LPDLFREGHSVVVEGF+KP+
Sbjct: 131 FRLGGLVLEGSVAQPAASQ-EMEFVITDLITDILVRYKGSLPDLFREGHSVVVEGFIKPY 189

Query: 187 TDDLRRDTAGRKVSDKARDCECFFSATEVLAKHDEKYMPKEVG 229
           TD++R++ + + +S KAR+ +CFFSATEVLAKHDEKYMP+EV 
Sbjct: 190 TDEVRKEVSTKPISKKARNLDCFFSATEVLAKHDEKYMPQEVA 232



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,828,245
Number of extensions: 126849
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 170
Effective length of database: 8,447,217
Effective search space: 1436026890
Effective search space used: 1436026890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)