BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0545800 Os10g0545800|AK103222
         (267 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0545800  CcmE/CycJ protein family protein                    369   e-102

>Os10g0545800 CcmE/CycJ protein family protein
          Length = 267

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 193/254 (75%)

Query: 14  PALLHTPSPVPIPRXXXXXXGEVGGTPVXXXXXXXXXXXXXXXXXXXXXXXXTDIGARAR 73
           PALLHTPSPVPIPR      GEVGGTPV                        TDIGARAR
Sbjct: 14  PALLHTPSPVPIPRAAAAAAGEVGGTPVASFLRRPARFFSSAARRGPARPRATDIGARAR 73

Query: 74  QLQSRRLWTYALTFGCAAGFVVTVLATFQDQLVFYLTPTDALARYATDRSKSRVRLGGLV 133
           QLQSRRLWTYALTFGCAAGFVVTVLATFQDQLVFYLTPTDALARYATDRSKSRVRLGGLV
Sbjct: 74  QLQSRRLWTYALTFGCAAGFVVTVLATFQDQLVFYLTPTDALARYATDRSKSRVRLGGLV 133

Query: 134 LEGSVAHPSASSSEIEFVVTDLITDVLVRYEGALPDLFREGHSVVVEGFLKPFTDDLRRD 193
           LEGSVAHPSASSSEIEFVVTDLITDVLVRYEGALPDLFREGHSVVVEGFLKPFTDDLRRD
Sbjct: 134 LEGSVAHPSASSSEIEFVVTDLITDVLVRYEGALPDLFREGHSVVVEGFLKPFTDDLRRD 193

Query: 194 TAGRKVSDKARDCECFFSATEVLAKHDEKYMPKEVGXXXXXXXXXXXXXXXXXXXXXXXX 253
           TAGRKVSDKARDCECFFSATEVLAKHDEKYMPKEVG                        
Sbjct: 194 TAGRKVSDKARDCECFFSATEVLAKHDEKYMPKEVGEALERNKKKLEEEAAAAAAASQES 253

Query: 254 XXXXXXXDGAKSSS 267
                  DGAKSSS
Sbjct: 254 ATAAVALDGAKSSS 267



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,296,865
Number of extensions: 215841
Number of successful extensions: 519
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 168
Effective length of database: 11,866,615
Effective search space: 1993591320
Effective search space used: 1993591320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)