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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0545600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4 (0.0492) R2 : 0.207
β1 : -0.796 (0.187) R2dD : 0.0359 R2D : 0.0104
β2 : 0.968 (0.117) R2dC : 0.121 R2C : 0.116
β3 : -0.974 (0.15) R2dE : 0.0846 R2E : 0.0476
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.02 (0.109) R2dN8 : 0.000107 R2N8 : -0.00155
σ : 0.911
deviance : 383.01
__
_____
C
peak time of C : 13.3
E
wheather : atmosphere
threshold : 1009
memory length : 19547
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
380.82 0.917 3.99 -0.718 0.966 -0.922 -1.06 -0.312 -0.0443 13.3 1011 9019 -- --
378.11 0.906 3.99 -0.759 0.986 -0.946 -1.05 -- -0.0304 13.3 1010 19528 -- --
382.36 0.911 3.98 -0.579 0.983 -0.889 -- -0.532 0.00576 13.3 1010 19702 -- --
383.01 0.911 4 -0.796 0.968 -0.974 -- -- -0.02 13.3 1009 19547 -- --
440.67 0.978 3.99 -0.678 -- -0.959 -- -0.393 0.0082 -- 1009 18914 -- --
412.64 0.952 3.94 -0.384 0.948 -- -1.16 -- 0.188 13.3 -- -- -- --
418.13 0.958 3.95 -0.424 0.95 -- -- -- 0.181 13.3 -- -- -- --
441 0.978 4.01 -0.818 -- -0.963 -- -- -0.0312 -- 1009 18907 -- --
397.85 0.929 3.96 -- 0.992 -0.862 -- -- 0.109 13.4 1009 18272 -- --
473.79 1.02 3.96 -0.461 -- -- -- -- 0.162 -- -- -- -- --
422.87 0.962 3.94 -- 0.957 -- -- -- 0.229 13.3 -- -- -- --
457.01 0.996 3.98 -- -- -0.765 -- -- 0.0944 -- 1009 18895 -- --
479.4 1.02 3.95 -- -- -- -- -- 0.213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 368.18 precipitation 0.1 43200 > th dose dependent rect. 1 2
2 368.25 precipitation 0.1 43200 > th dose dependent rect. 24 4
4 368.88 precipitation 0.1 43200 > th dose independent rect. 1 2
5 368.90 precipitation 0.1 43200 > th dose independent rect. 24 4
6 369.14 precipitation 0.1 43200 < th dose independent rect. 24 4
7 369.14 precipitation 0.1 43200 < th dose dependent rect. 24 4
9 369.42 precipitation 0.1 43200 < th dose independent rect. 1 2
10 369.42 precipitation 0.1 43200 < th dose dependent rect. 1 2
13 369.59 precipitation 0.1 43200 > th dose dependent rect. 22 5
14 369.65 precipitation 0.1 43200 < th dose independent rect. 19 9
15 369.65 precipitation 0.1 43200 < th dose dependent rect. 19 9
16 369.66 precipitation 0.1 43200 > th dose independent rect. 19 9
17 369.71 precipitation 0.1 43200 > th dose independent rect. 21 7
19 369.83 precipitation 0.1 43200 < th dose independent rect. 21 7
20 369.83 precipitation 0.1 43200 < th dose dependent rect. 21 7
21 369.96 precipitation 0.1 43200 > th dose independent rect. 22 5
22 369.97 precipitation 0.1 43200 > th dose dependent rect. 21 7
23 370.07 precipitation 0.1 43200 > th dose dependent rect. 19 9
24 370.18 precipitation 0.1 43200 < th dose independent rect. 22 5
25 370.18 precipitation 0.1 43200 < th dose dependent rect. 22 5
26 370.24 precipitation 0.1 43200 > th dose dependent rect. 18 2
27 370.26 precipitation 0.1 43200 > th dose independent rect. 17 3
39 370.74 humidity 70.0 43200 < th dose independent rect. 12 2
42 370.77 precipitation 0.1 43200 < th dose independent rect. 17 3
43 370.77 precipitation 0.1 43200 < th dose dependent rect. 17 3
66 371.28 precipitation 0.1 43200 > th dose independent rect. 16 14
67 371.32 precipitation 0.1 43200 < th dose independent sin 13 NA
68 371.32 precipitation 0.1 43200 < th dose independent rect. 16 14
69 371.32 precipitation 0.1 43200 < th dose dependent sin 13 NA
70 371.32 precipitation 0.1 43200 < th dose dependent rect. 16 14
71 371.34 precipitation 0.1 43200 > th dose independent sin 13 NA
80 371.45 precipitation 0.1 43200 > th dose dependent rect. 16 14
89 371.51 precipitation 0.1 43200 > th dose dependent sin 13 NA
105 371.70 precipitation 0.1 43200 > th dose dependent rect. 13 18
106 371.72 precipitation 0.1 43200 < th dose independent rect. 13 17
107 371.72 precipitation 0.1 43200 < th dose dependent rect. 13 17
108 371.74 precipitation 0.1 43200 > th dose independent rect. 13 17
126 371.94 humidity 80.0 43200 < th dose independent rect. 8 2
139 372.12 humidity 80.0 43200 > th dose independent rect. 19 2
166 372.48 humidity 70.0 43200 > th dose independent rect. 10 7
193 372.74 radiation 10.0 43200 > th dose independent rect. 17 15
196 372.79 radiation 10.0 43200 > th dose independent rect. 16 17
229 373.07 radiation 10.0 43200 > th dose independent rect. 5 3
260 373.15 radiation 20.0 43200 < th dose dependent rect. 14 1
262 373.16 humidity 80.0 43200 > th dose independent rect. 8 1
267 373.18 radiation 10.0 43200 < th dose dependent rect. 6 11
272 373.20 precipitation 0.1 43200 > th dose dependent rect. 15 5
284 373.32 radiation 10.0 43200 < th dose dependent rect. 2 14
295 373.34 radiation 10.0 43200 < th dose dependent sin 1 NA
326 373.47 radiation 20.0 43200 > th dose independent rect. 12 3
345 373.65 precipitation 0.1 43200 > th dose dependent rect. 6 22
347 373.66 precipitation 0.1 43200 > th dose independent rect. 7 21
349 373.67 radiation 10.0 43200 < th dose dependent rect. 10 7
364 373.70 precipitation 0.1 43200 < th dose independent rect. 7 21
367 373.70 precipitation 0.1 43200 < th dose dependent rect. 7 21
370 373.72 radiation 10.0 43200 > th dose independent sin 12 NA
383 373.77 radiation 10.0 43200 > th dose independent rect. 13 20
414 373.92 precipitation 0.1 43200 > th dose dependent rect. 13 7
443 373.97 radiation 20.0 43200 < th dose dependent rect. 11 5
543 374.10 radiation 20.0 43200 < th dose dependent no NA NA
603 374.12 radiation 20.0 43200 < th dose dependent rect. 14 23
624 374.17 wind 1.0 43200 > th dose independent rect. 6 2
629 374.19 humidity 70.0 43200 > th dose dependent rect. 8 1
647 374.28 radiation 10.0 43200 < th dose independent rect. 11 1
708 374.42 humidity 80.0 43200 > th dose independent rect. 7 3
769 374.48 precipitation 0.1 43200 > th dose dependent rect. 12 2
815 374.58 radiation 20.0 43200 > th dose independent rect. 6 9
846 374.65 radiation 30.0 43200 > th dose independent rect. 12 22
850 374.67 radiation 20.0 43200 > th dose independent rect. 10 23
917 374.77 radiation 30.0 43200 > th dose independent rect. 14 21
959 374.81 radiation 30.0 43200 > th dose independent rect. 15 19
981 374.83 radiation 10.0 43200 < th dose dependent rect. 13 3