BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0545600 Os10g0545600|Os10g0545600
         (475 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0545600  WD40-like domain containing protein                 852   0.0  
Os03g0108200  WD40-like domain containing protein                 360   1e-99

>Os10g0545600 WD40-like domain containing protein
          Length = 475

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/441 (94%), Positives = 417/441 (94%)

Query: 35  PQVLXXXXXXXXXXXXXXXXXXXXXXXXVTRGGGGDREARVSESRDSAEVNGGEAESQSL 94
           PQVL                        VTRGGGGDREARVSESRDSAEVNGGEAESQSL
Sbjct: 35  PQVLELSSSSSGEEGGSWEEEESQGSVEVTRGGGGDREARVSESRDSAEVNGGEAESQSL 94

Query: 95  PGCPICMNAWTADGAHRQVLSLREKNESLEKQNQELVQEINEHKRQIILQQNFINESSLK 154
           PGCPICMNAWTADGAHRQVLSLREKNESLEKQNQELVQEINEHKRQIILQQNFINESSLK
Sbjct: 95  PGCPICMNAWTADGAHRQVLSLREKNESLEKQNQELVQEINEHKRQIILQQNFINESSLK 154

Query: 155 RKKMADQSSHGTTDADSVASLTADDGHSSPCSFVLQNEFFLDGARVMGIDASSQIILTSG 214
           RKKMADQSSHGTTDADSVASLTADDGHSSPCSFVLQNEFFLDGARVMGIDASSQIILTSG
Sbjct: 155 RKKMADQSSHGTTDADSVASLTADDGHSSPCSFVLQNEFFLDGARVMGIDASSQIILTSG 214

Query: 215 RAPGIGAEHVLTKAPGWSCSGDQNSPNHIYAGLQNGMLLTFDIRQTVAPLHSMMGLSTHP 274
           RAPGIGAEHVLTKAPGWSCSGDQNSPNHIYAGLQNGMLLTFDIRQTVAPLHSMMGLSTHP
Sbjct: 215 RAPGIGAEHVLTKAPGWSCSGDQNSPNHIYAGLQNGMLLTFDIRQTVAPLHSMMGLSTHP 274

Query: 275 VHTIHSVVDGGGSRKVISASSIGPCIWDVDGSRNRPDLLNGMENHGVCISLACNPPSSDL 334
           VHTIHSVVDGGGSRKVISASSIGPCIWDVDGSRNRPDLLNGMENHGVCISLACNPPSSDL
Sbjct: 275 VHTIHSVVDGGGSRKVISASSIGPCIWDVDGSRNRPDLLNGMENHGVCISLACNPPSSDL 334

Query: 335 LVASFRPKVELSDDGTSQAGKSQSPTPSASGKLGCHALIRRTSNTSFARDQICRGNVSGL 394
           LVASFRPKVELSDDGTSQAGKSQSPTPSASGKLGCHALIRRTSNTSFARDQICRGNVSGL
Sbjct: 335 LVASFRPKVELSDDGTSQAGKSQSPTPSASGKLGCHALIRRTSNTSFARDQICRGNVSGL 394

Query: 395 RMSKSAIIPFTGRSNQQHLFAYGDESLRGVRTWRLPSLQTFADLRPHRQPILDLRFAESS 454
           RMSKSAIIPFTGRSNQQHLFAYGDESLRGVRTWRLPSLQTFADLRPHRQPILDLRFAESS
Sbjct: 395 RMSKSAIIPFTGRSNQQHLFAYGDESLRGVRTWRLPSLQTFADLRPHRQPILDLRFAESS 454

Query: 455 STGERYLGCLSEDRLQVFRVR 475
           STGERYLGCLSEDRLQVFRVR
Sbjct: 455 STGERYLGCLSEDRLQVFRVR 475



>Os03g0108200 WD40-like domain containing protein
          Length = 524

 Score =  360 bits (924), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 222/490 (45%), Positives = 267/490 (54%), Gaps = 138/490 (28%)

Query: 82  AEVNGGEAESQSLPGCPICMNAWTADGAHR-------------------------QVLSL 116
           A V+G  AE  +   CP+CM AW + GAHR                         +VL L
Sbjct: 77  ARVSGAAAEKNA---CPVCMEAWASQGAHRIWFRPKDITNLYAPEVAVPNNDLEKEVLYL 133

Query: 117 REKNESL-----------EKQNQELVQEINEHKRQIILQQNFINESSLKRKKMADQSSHG 165
           R K ESL           E+ N+ LV+  +  KRQI+ +Q  +N  S KR+K        
Sbjct: 134 RGKAESLGETVMKHEKLIEEMNERLVELTSAQKRQILSEQRLMNVGSSKRQK-------- 185

Query: 166 TTDADSVASLTADDGHSSPCSFVLQNEFFLDGARVMGIDASSQI---------------- 209
                                     EFF+DG RVM IDA +Q                 
Sbjct: 186 --------------------------EFFMDGLRVMAIDAFNQTILASGKAPGIGQEHVL 219

Query: 210 ---------------------------ILTSGRAP-----------GIGAEHVLTKA--- 228
                                      IL SG A             + A+ V+ +    
Sbjct: 220 YKFSMVSHHEARNIQLPLDTKTVRDICILPSGSAIFTSLGRKLSSFSMTADRVVLQCDLP 279

Query: 229 -PGWSCSGDQNSPNHIYAGLQNGMLLTFDIRQTVAPLHSMMGLSTHPVHTIHSVVDGGGS 287
            PGWSCS D++S   I AGLQNG L+ FDIRQT  PLHSM+GLSTHPVHT+H+V+D  GS
Sbjct: 280 CPGWSCSADESS-RQICAGLQNGNLIIFDIRQTSRPLHSMVGLSTHPVHTLHTVIDNNGS 338

Query: 288 RKVISASSIGPCIWDVDGSRNRPDLLNGMENHGVCISLACNPPSSDLLVASFRPKVELSD 347
           RK +SASSIGPC+WD DG + RP LL G +N  VCISLAC P SSDLLVASFRPKVE S+
Sbjct: 339 RKFLSASSIGPCMWDTDGIQGRPKLLLGTDNQRVCISLACAPSSSDLLVASFRPKVETSE 398

Query: 348 DGT-SQAGKSQSPTPSASGKLGCHALIRRTSN-TSFARDQICRGNVSGLRMSKSAIIPFT 405
           D T SQ   SQ+PTPS  GKLG H+ IRR  N +SF  D+ C   VS +RMSKSAIIP+ 
Sbjct: 399 DATASQVYLSQTPTPSGGGKLGYHSFIRRAGNSSSFTEDRTCSTLVSEIRMSKSAIIPY- 457

Query: 406 GRSNQQHLFAYGDESLRGVRTWRLPSLQTFADLRPHRQPILDLRFAESSSTGERYLGCLS 465
              N QHLFAYGDESLRGVRTWRLPS +  +DL   +QP+LDLR+AESSS G RYLG LS
Sbjct: 458 --GNNQHLFAYGDESLRGVRTWRLPSFEMHSDLSSLQQPVLDLRYAESSSGG-RYLGYLS 514

Query: 466 EDRLQVFRVR 475
            ++LQVFR+R
Sbjct: 515 TEKLQVFRIR 524



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,337,082
Number of extensions: 666569
Number of successful extensions: 2549
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2542
Number of HSP's successfully gapped: 3
Length of query: 475
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 370
Effective length of database: 11,553,331
Effective search space: 4274732470
Effective search space used: 4274732470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)