BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0545600 Os10g0545600|Os10g0545600
(475 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03450.1 | chr5:858954-862238 REVERSE LENGTH=631 157 2e-38
AT5G03750.1 | chr5:984796-985497 FORWARD LENGTH=170 56 4e-08
>AT5G03450.1 | chr5:858954-862238 REVERSE LENGTH=631
Length = 630
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 145/261 (55%), Gaps = 21/261 (8%)
Query: 225 LTKAPGWSCSGDQNSPNHIYAGLQNGMLLTFDIRQTVAPLHSMMGLSTHPVHTIHSV--- 281
L AP WSCS D S +HIYAGLQNGM+L FD+RQT P SM GL+T+PVHT+H +
Sbjct: 375 LPAAP-WSCSWDLKSSHHIYAGLQNGMVLIFDMRQTTGPFASMTGLTTNPVHTVHHLSGN 433
Query: 282 -VDGGGSRKVISASSIGPCIWDVDGSRNRPDLLNGMENHGVCISLACNPPSSDLLVASFR 340
R ++SASSIG C W++ GS P L++ N GVCIS + P S+ +VAS+R
Sbjct: 434 STPTSDVRTLLSASSIGLCQWNISGSEGSPSLVSETGNPGVCIS-SSYCPRSNHIVASYR 492
Query: 341 PKVELSDDGT------SQAGKSQSPTPSASGKLGCHALIRRTSNTSFARDQICRGNVSGL 394
P+V SDD +Q G S S + G CH RR ++ + + + V +
Sbjct: 493 PRVGSSDDTVPTQPSLTQTGVSNSNSNGVDGFHVCHK--RRGVDSYYQKLSSTQAIVDPI 550
Query: 395 RMSKSAIIPFTGRSNQQHLFAYGDESLRGVRTWRLPSLQTFADLRP--HRQPILDLRFAE 452
R+ ++AII F G Q LFA DES R + + PS T + P P+ D+++
Sbjct: 551 RLPRTAIIDFGGERKQ--LFASCDESTREL-ILQDPSTFTISQRLPLSSHLPLQDVKYCH 607
Query: 453 SSSTGERYLGCLSEDRLQVFR 473
+ G LG L++DRLQ+ R
Sbjct: 608 VN--GSDLLGLLTDDRLQILR 626
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 25/138 (18%)
Query: 107 DGAHRQVLSLREKNESLEKQ-----NQELVQEINEHKRQIILQQNFINESSLKRKKMADQ 161
D AH+++L L K S+E++ N+E+ +I E + ++ E + +KK+A+
Sbjct: 187 DEAHKRILFLEAKLRSIEQKTASWSNKEVQWKITEAELRL--------EVTKLKKKIANM 238
Query: 162 SS--HGTTDADSVAS----------LTADDGHSSPCSFVLQNEFFLDGARVMGIDASSQI 209
S G+ +VAS G S CSF Q + ++G R+ ID QI
Sbjct: 239 ESTTKGSQSQSNVASQEKYIPAHNIYQEHHGQSPSCSFRHQGDLLINGGRIFDIDGGRQI 298
Query: 210 ILTSGRAPGIGAEHVLTK 227
+L + R G+G VLT+
Sbjct: 299 LLYARRLSGVGGTFVLTQ 316
>AT5G03750.1 | chr5:984796-985497 FORWARD LENGTH=170
Length = 169
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 4/53 (7%)
Query: 232 SCSGDQNSPNHIYAGLQNGMLLTFDIRQTVAPLHSMMGLSTHPVHTIHSVVDG 284
SCS D N+ +++YAGLQNGM+L FD+RQ PL S+ ++++ VH +VDG
Sbjct: 41 SCSWDLNNYHNVYAGLQNGMVLVFDMRQNRGPLVSLADVTSNSVH----IVDG 89
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,238,089
Number of extensions: 389845
Number of successful extensions: 1307
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 3
Length of query: 475
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 373
Effective length of database: 8,310,137
Effective search space: 3099681101
Effective search space used: 3099681101
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)