Os10g0539700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0539700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.55 | 0.366 | 14 | 0.385 | 1.33 | -0.429 | 1.05 | 1.01 | 0.214 | 6.09 | 20.3 | 1017 | -- | -- |
| 63.02 | 0.37 | 14 | 0.252 | 1.35 | -0.582 | 1.05 | -- | 0.222 | 6.03 | 20.59 | 1127 | -- | -- |
| 62.97 | 0.37 | 14 | 0.429 | 1.35 | -0.459 | -- | 1.07 | 0.223 | 6.13 | 20.3 | 1187 | -- | -- |
| 64.59 | 0.374 | 14 | 0.247 | 1.39 | -0.821 | -- | -- | 0.166 | 6.17 | 18.64 | 1229 | -- | -- |
| 150.8 | 0.572 | 14 | 0.127 | -- | -0.61 | -- | -0.175 | 0.136 | -- | 20.77 | 548 | -- | -- |
| 71.07 | 0.395 | 14 | -0.0158 | 1.33 | -- | 1.09 | -- | 0.055 | 6.22 | -- | -- | -- | -- |
| 73.99 | 0.403 | 14 | -0.00316 | 1.34 | -- | -- | -- | 0.0515 | 6.26 | -- | -- | -- | -- |
| 106.03 | 0.48 | 14.1 | 0.306 | -- | -1.03 | -- | -- | 0.189 | -- | 27.5 | 402 | -- | -- |
| 65.96 | 0.378 | 14 | -- | 1.37 | -0.843 | -- | -- | 0.12 | 6.12 | 18.2 | 1245 | -- | -- |
| 166.88 | 0.604 | 14 | 0.033 | -- | -- | -- | -- | 0.0806 | -- | -- | -- | -- | -- |
| 73.99 | 0.402 | 14 | -- | 1.34 | -- | -- | -- | 0.0518 | 6.27 | -- | -- | -- | -- |
| 106.32 | 0.48 | 14 | -- | -- | -1.05 | -- | -- | 0.231 | -- | 27.5 | 409 | -- | -- |
| 166.9 | 0.603 | 14 | -- | -- | -- | -- | -- | 0.0769 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 14 |
| 2 | 59.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 5 | 60.21 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 18 | 20 |
| 9 | 60.37 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 14 | 60.40 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 26 | 60.49 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 28 | 60.50 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 35 | 60.63 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 41 | 60.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 21 |
| 50 | 60.72 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 14 |
| 66 | 60.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 16 |
| 67 | 60.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 97 | 61.03 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 123 | 61.06 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 128 | 61.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 4 |
| 131 | 61.10 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 133 | 61.11 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 134 | 61.11 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 17 |
| 150 | 61.16 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 21 | 21 |
| 155 | 61.16 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 156 | 61.17 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 12 | 23 |
| 162 | 61.19 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 22 |
| 179 | 61.25 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 184 | 61.26 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 7 |
| 192 | 61.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 193 | 61.27 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 194 | 61.27 | temperature | 20.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 200 | 61.28 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 24 | 18 |
| 209 | 61.30 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 9 | NA |
| 220 | 61.32 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 222 | 61.32 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 232 | 61.34 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 234 | 61.34 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 23 |
| 243 | 61.35 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 244 | 61.35 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 23 |
| 245 | 61.35 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 23 |
| 253 | 61.36 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 267 | 61.37 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 23 |
| 281 | 61.39 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 293 | 61.40 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 354 | 61.45 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 361 | 61.46 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 23 |
| 372 | 61.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 373 | 61.47 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 395 | 61.49 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 409 | 61.50 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 416 | 61.51 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 421 | 61.52 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 14 |
| 450 | 61.54 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 452 | 61.54 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 473 | 61.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 485 | 61.57 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 506 | 61.58 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 507 | 61.59 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 519 | 61.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 539 | 61.61 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 540 | 61.61 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 559 | 61.62 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 583 | 61.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 19 |
| 590 | 61.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 607 | 61.66 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 619 | 61.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 660 | 61.69 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 687 | 61.72 | temperature | 20.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 714 | 61.74 | temperature | 20.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 716 | 61.74 | temperature | 20.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 753 | 61.76 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 771 | 61.76 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 23 |
| 774 | 61.77 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 785 | 61.78 | temperature | 20.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 786 | 61.78 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 788 | 61.78 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 792 | 61.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 824 | 61.80 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 842 | 61.81 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 896 | 61.84 | atmosphere | 1005.0 | 90 | > th | dose dependent | no | NA | NA |
| 908 | 61.85 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 910 | 61.85 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 915 | 61.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 21 |
| 922 | 61.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 924 | 61.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 5 |
| 925 | 61.86 | humidity | 70.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 932 | 61.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 937 | 61.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 959 | 61.88 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 962 | 61.88 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 969 | 61.89 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 984 | 61.90 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 986 | 61.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 994 | 61.90 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 19 |