BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0539700 Os10g0539700|AK120628
(832 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G42550.1 | chr1:15977131-15979734 FORWARD LENGTH=844 458 e-129
AT5G26160.1 | chr5:9143269-9146312 FORWARD LENGTH=977 95 2e-19
AT5G20610.1 | chr5:6969184-6972794 FORWARD LENGTH=1165 88 2e-17
>AT1G42550.1 | chr1:15977131-15979734 FORWARD LENGTH=844
Length = 843
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 304/773 (39%), Positives = 423/773 (54%), Gaps = 89/773 (11%)
Query: 93 GGKTRAAAIWEWKPVRVLSRIGKRRCGCLLSVEVAGVRGVPASMDGLRLAVTVRKAETKD 152
G K IW WKP+R L RIG ++ CLLSVEV + +PASM+GLRL V VRK ETKD
Sbjct: 114 GVKEEKKGIWNWKPIRGLVRIGMQKLSCLLSVEVVAAQNLPASMNGLRLGVCVRKKETKD 173
Query: 153 GAVQTMPATVRGGCADFVETLFVRCNIYFAGGAGTGKPLKLEPRRFVVSVVPAEAPGVRL 212
GAVQTMP V G ADF ETLF++C++Y++ G G P K E R F+ + +A +
Sbjct: 174 GAVQTMPCRVSQGSADFEETLFIKCHVYYSPANGKGSPAKFEARPFLFYLFAVDAKELEF 233
Query: 213 GAHAVDVSSLVLDSLQK-SSEGRRVRWFDTAVTLSGKATGGELLLKLGFQLMD-DAGLCL 270
G H VD+S L+ +S++K + EG RVR +D LSGKA GGEL LKLGFQ+M+ D G +
Sbjct: 234 GRHVVDLSELIQESVEKMNYEGARVRQWDMNWGLSGKAKGGELALKLGFQIMEKDGGAGI 293
Query: 271 YTQA---ATEKVDVVDDVSPALARAHNKNSFSVARTSGPKLSASDAAISP-----SMRAY 322
Y++ + + + + R +K SFSV PK+++ A +P S+ +
Sbjct: 294 YSKQGEFGMKPSSKPKNFANSFGRKQSKTSFSVP---SPKMTSRSEAWTPASGVESVSDF 350
Query: 323 KQLIDRLSVDEHGDPVTSLI------PRKLADDELSGDVGLPEYEVVDKGVE-------- 368
+ + L++DE + P + A+D D P++EVVDKGVE
Sbjct: 351 HGM-EHLNLDEPEEKPEEKPVQKNDKPEQRAED----DQEEPDFEVVDKGVEFDDDLETE 405
Query: 369 ----TVKE--VVHYHAHRDV--------LKELDSIAEQIEAIEALM---TNGGXXXXXXX 411
T+ E V H +V L ELDSIA+QI+A+E++M ++GG
Sbjct: 406 KSDGTIGERSVEMKEQHVNVDDPRHIMRLTELDSIAKQIKALESMMKDESDGGDGET--- 462
Query: 412 XXVDQKQCLDADEEMVTVEFLRKLEVVDDKGRKLKQPMTPRSE--SEKKXXXXXXXXXXD 469
+ Q LD +E+ VT EFL+ LE + + K Q SE S + D
Sbjct: 463 ----ESQRLDEEEQTVTKEFLQLLEDEETEKLKFYQHKMDISELRSGESVDDESENYLSD 518
Query: 470 LGPGLGTAVQTRDGGFLVSMNPFDLPLEKGDAPPKLAMQVSRPF-VLPSSMAATGFDVLQ 528
LG G+G VQTRDGG+LVSMNPFD + + D PKL MQ+S+ VLP + ATGF++
Sbjct: 519 LGKGIGCVVQTRDGGYLVSMNPFDTVVMRKDT-PKLVMQISKQIVVLPEAGPATGFELFH 577
Query: 529 KMAAAGGADEVRDKVARLGGMDNLTGKTPEQVGFEGIAEAVIGGRRTEGXXXXXXXXXXX 588
+MA +G +E+ K++ L +D L GKT EQV FEGIA A+I GR E
Sbjct: 578 RMAGSG--EELESKISSLMAIDELMGKTGEQVAFEGIASAIIQGRNKERANTSAARTVAA 635
Query: 589 XXKLAAAVSDGRSERVATGIWTAADDPET-LEEVIAFSLQKLEAMAVDALMIQAEMADED 647
+A A+S GR ER+ TGIW ++P T EEV+A SLQKLE M V+ L IQA+M D++
Sbjct: 636 VKTMANAMSSGRRERIMTGIWNVEENPLTSAEEVLAVSLQKLEEMVVEGLKIQADMVDDE 695
Query: 648 APFEVAPAAGDATTVFDALVSPDEWSESRGSDGRVTVVAAIQLRDPSRRYEAVGAPMVAV 707
APFEV+ A G + ++ + +EW + + ++TV+A +QLRDP+RRYEAVG +V
Sbjct: 696 APFEVSAAKGQKNPL-ESTIPLEEWQKEHRTQQKLTVLATVQLRDPTRRYEAVGGTVVVA 754
Query: 708 VQSARLLGAAGNSGGRFKVRSLHVGGVQLRCPVXXXXXXXXXXXXXERQKLTAMQWALAH 767
VQ+ KV SLH+GGV+ E+++LTA QW + H
Sbjct: 755 VQAEEEEEKG------LKVGSLHIGGVK--------------KDAAEKRRLTAAQWLVEH 794
Query: 768 XXXXXXXXXXXXXXXXXXXXXXXXXXPDVVWSLSSRVLAGMWLKTVRNPDVRV 820
++WSLSSRV+A MWLK++RNPDV++
Sbjct: 795 GMGKKGKKKSNIKKKEKEEEEEE-----MLWSLSSRVMADMWLKSIRNPDVKL 842
>AT5G26160.1 | chr5:9143269-9146312 FORWARD LENGTH=977
Length = 976
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Query: 95 KTRAAAIWEWK-PVRVLSRIGKRRCGCLLSVEVAGVRGVPASMDGLRLAVTVRKAETKDG 153
K ++ W WK P+ ++ G+RR + V + G+P ++DG +L V ++ KD
Sbjct: 65 KKKSLVPWNWKKPLNAIAHFGQRRFDVCFLLHVHSIEGLPLNLDGTKLVVQWKR---KDE 121
Query: 154 AVQTMPATVRGGCADFVETLFVRCNIYFAGGAGTGKPLKLEPRRFVVSVVPAEAPGVRLG 213
+ T P+ V G A+F ETL RC++Y G + K + + F++ V P +AP + LG
Sbjct: 122 VMTTQPSKVLQGTAEFEETLTHRCSVY-GSKHGPHRSAKYQVKLFLIYVSPVDAPWLVLG 180
Query: 214 AHAVDVSSLVLDSLQKSSEGRRVRWFDTAVTLSGKATGGELLLKLGFQLM 263
H +D++ ++ SL++ R R ++T+ LSG A L L + ++
Sbjct: 181 KHWIDLTRILPLSLEEMEGTRSTRKWNTSFKLSGLAESAVLNLSFDYSVV 230
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 33/272 (12%)
Query: 470 LGPGLGTAVQTRDGGFLVSMNPFDLPLEKGDAPPKLAMQVSRPFVLPSSMAATGFDVLQK 529
LG +G +V T+ GG + SMN L + +L MQVS P VL S + + ++LQ
Sbjct: 590 LGDNIGPSVWTKGGGCIRSMN--HLLFRESKEASQLIMQVSVPVVLVSELGSDILEILQ- 646
Query: 530 MAAAGGADEVRDKVARLGGMDNLTGKTPEQVGFEGIAEAVIGGRRTEGXXXXXXXXXXXX 589
+ AA G + + +V L ++++ GKT +V V +RT G
Sbjct: 647 IFAASGIEGLCSEVNALIPLEDIMGKTIHEVV------DVTKFKRT-GQDCSDKSKGVVV 699
Query: 590 XKLAAAVSDGRSERVATGIWTAADDPETLEEVIAFSLQKLEAMAVDALMIQAEMADEDAP 649
K + S ++ P LE+V + ++ ++ ++++ L IQ M+D+D P
Sbjct: 700 QKPPGQLHLCSSNEEFGSSMCPSNVP--LEDVTSLAIDEIYILSIEGLKIQCSMSDQDPP 757
Query: 650 FEVAPAAGDATTVFDAL---VSPDEW----------------SESRGSDGRVTVVAAIQ- 689
+AP D + + + ++ DEW S +G R + A+Q
Sbjct: 758 SGIAPKPMDQSDALELIRFSLTLDEWLRLDQGMLENKDQDLASNGKGHTLRNKLTLALQV 817
Query: 690 -LRDPSRRYEAVGAPMVAVVQSARLLGAAGNS 720
LRDPS E +GA M+A++Q R L + +S
Sbjct: 818 LLRDPSLNNEPIGASMLALIQVERSLDSPNSS 849
>AT5G20610.1 | chr5:6969184-6972794 FORWARD LENGTH=1165
Length = 1164
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 5/167 (2%)
Query: 100 AIWEWKPVRVLSRIGKRRCGCLLSVEVAGVRGVPASMDGLRLAVTVRKAETKDGAVQTMP 159
+ W W P+R ++ + RR C S +V + G+P L L V ++ +D ++ T P
Sbjct: 60 SFWNW-PLRAINHVRNRRFNCCFSAQVHSIEGLPPIFQDLSLTVHWKR---RDESLSTRP 115
Query: 160 ATVRGGCADFVETLFVRCNIYFAGGAGTGKPLKLEPRRFVVSVVPAEAPGVRLGAHAVDV 219
A V G A+F + L C++Y +G K E + F++ V +P + LG H +D+
Sbjct: 116 AKVSNGRAEFKDKLTHTCSVY-GSRSGPHHSAKYEAKHFLLYVSLVGSPEIDLGKHRMDL 174
Query: 220 SSLVLDSLQKSSEGRRVRWFDTAVTLSGKATGGELLLKLGFQLMDDA 266
+ L+ +L++ + + + T LSGKA G L + G+ ++ D
Sbjct: 175 TKLLPLTLEELQDEKSSGKWSTTFQLSGKANGATLSMSFGYTVVGDT 221
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 470 LGPGLGTAVQTRDGGFLVSMNPFDLPLEKGDAPPKLAMQVSRPFVLPSSMAATGFDVLQK 529
LG GLG VQT++GGFL SMNP L A L MQVS P V+P+ M + ++LQK
Sbjct: 704 LGDGLGPVVQTKNGGFLRSMNP--LLFRNSKAGGSLIMQVSTPVVVPAEMGSGIMEILQK 761
Query: 530 MAAAGGADEVRDKVARLGGMDNLTGKTPEQVGFEGIAEAVIGGR-----RTEGXXXXXXX 584
+A A G +++ + ++ +D++TGKT E+V +E IG R R G
Sbjct: 762 LATA-GIEKLSMQANKVMPLDDITGKTMEEVLWETSPTIDIGDRDHVSERESGDASGFVR 820
Query: 585 XXXXXXKLAAAVSDGRSERVATGIWTAADDPE--TLEEVIAFSLQKLEAMAVDALMIQAE 642
AA + ++ + D E +LE++ ++ ++EA++++ L IQ+
Sbjct: 821 GGERRTSFAA-----KPKKFGSSSGNNNFDSEYVSLEDLAPLAMDQIEALSLEGLRIQSG 875
Query: 643 MADEDAPFEV-APAAGDAT 660
M+DEDAP ++ A + GD +
Sbjct: 876 MSDEDAPSDITAQSIGDIS 894
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,450,565
Number of extensions: 536516
Number of successful extensions: 1314
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 5
Length of query: 832
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 725
Effective length of database: 8,173,057
Effective search space: 5925466325
Effective search space used: 5925466325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)