FiT-DB / Search/ Help/ Sample detail

Os10g0539400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MCE-FAMILY PROTEIN MCE2C.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0127) R2 : 0.588
β1 : 1.17 (0.0465) R2dD : 0.589 R2D : 0.481
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.256 (0.0271) R2dN8 : 0.108 R2N8 : -0.000955
σ : 0.238
deviance : 26.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.28 0.217 10.5 1.2 0.218 0.826 0.51 1.18 0.304 0.767 0.8301 1361 -- --
21.94 0.218 10.5 1.3 0.172 0.592 0.334 -- 0.311 0.351 1.014 1333 -- --
22.14 0.219 10.5 1.21 0.22 0.696 -- 0.609 0.304 1.12 0.8391 1349 -- --
22.19 0.219 10.4 1.28 0.185 0.575 -- -- 0.32 1.06 1.075 1339 -- --
22.86 0.223 10.5 1.17 -- 0.673 -- 0.941 0.316 -- 1.349 6065 -- --
25.15 0.235 10.5 1.17 0.111 -- 0.225 -- 0.254 3.46 -- -- -- --
25.28 0.235 10.5 1.16 0.116 -- -- -- 0.253 4.11 -- -- -- --
22.87 0.223 10.4 1.32 -- 0.514 -- -- 0.333 -- 2.398 6055 -- --
57.35 0.353 10.5 -- 0.0847 0.413 -- -- 0.227 1.51 20 9309 -- --
26.01 0.238 10.5 1.17 -- -- -- -- 0.256 -- -- -- -- --
60.87 0.365 10.5 -- 0.138 -- -- -- 0.123 3.97 -- -- -- --
55.66 0.347 10.5 -- -- 0.411 -- -- 0.231 -- 10 9111 -- --
61.91 0.367 10.5 -- -- -- -- -- 0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.06 temperature 30.0 90 < th dose dependent rect. 4 13
2 21.06 temperature 30.0 90 < th dose dependent rect. 4 15
17 21.46 temperature 30.0 270 < th dose dependent rect. 2 14
18 21.48 radiation 1.0 1440 < th dose dependent rect. 17 1
45 21.74 radiation 1.0 720 < th dose dependent rect. 4 14
46 21.76 temperature 25.0 270 > th dose dependent sin 9 NA
53 21.81 precipitation 0.1 43200 > th dose dependent rect. 8 10
54 21.81 temperature 25.0 270 > th dose dependent rect. 17 20
56 21.83 temperature 10.0 90 > th dose dependent sin 2 NA
68 21.86 radiation 1.0 1440 < th dose dependent rect. 15 11
84 21.88 radiation 1.0 1440 < th dose independent rect. 16 2
93 21.89 precipitation 0.1 43200 > th dose dependent rect. 14 4
101 21.90 temperature 30.0 14400 < th dose independent rect. 5 4
114 21.90 radiation 1.0 720 < th dose dependent rect. 20 23
115 21.91 radiation 1.0 1440 > th dose independent rect. 16 2
129 21.93 temperature 30.0 14400 < th dose independent rect. 1 8
130 21.93 temperature 30.0 14400 < th dose independent rect. 23 10
131 21.93 temperature 30.0 14400 < th dose independent rect. 19 14
133 21.93 radiation 1.0 1440 < th dose dependent sin 16 NA
134 21.93 wind 9.0 14400 > th dose dependent rect. 15 2
138 21.94 temperature 30.0 14400 < th dose independent rect. 8 1
160 21.95 temperature 30.0 270 < th dose dependent rect. 1 20
170 21.97 radiation 40.0 14400 > th dose dependent rect. 12 1
190 21.98 radiation 1.0 1440 < th dose dependent rect. 8 22
197 22.00 precipitation 0.1 43200 > th dose independent rect. 14 4
206 22.00 radiation 1.0 1440 < th dose dependent rect. 8 12
210 22.00 radiation 1.0 1440 < th dose dependent rect. 8 17
212 22.00 temperature 30.0 90 < th dose dependent rect. 4 19
214 22.01 precipitation 0.1 43200 < th dose independent rect. 14 4
216 22.01 temperature 30.0 90 < th dose dependent sin 2 NA
219 22.01 precipitation 0.1 43200 < th dose dependent rect. 14 4
221 22.01 radiation 1.0 1440 < th dose dependent rect. 8 10
248 22.03 temperature 30.0 14400 > th dose independent rect. 8 1
249 22.03 precipitation 0.1 43200 > th dose independent rect. 17 1
277 22.04 precipitation 0.1 43200 < th dose independent rect. 17 1
281 22.04 precipitation 0.1 43200 < th dose dependent rect. 17 1
319 22.06 temperature 30.0 14400 > th dose dependent rect. 8 2
339 22.07 precipitation 0.1 43200 > th dose independent rect. 11 7
340 22.07 precipitation 0.1 43200 < th dose independent rect. 11 7
341 22.07 precipitation 0.1 43200 < th dose dependent rect. 11 7
364 22.10 humidity 80.0 14400 > th dose independent rect. 18 1
369 22.11 radiation 1.0 1440 < th dose independent rect. 15 15
372 22.11 wind 9.0 14400 > th dose dependent rect. 23 18
384 22.12 humidity 90.0 720 > th dose dependent rect. 5 17
391 22.13 wind 9.0 14400 > th dose dependent rect. 3 14
400 22.14 radiation 40.0 14400 > th dose independent rect. 12 1
417 22.15 radiation 40.0 14400 < th dose independent rect. 12 1
434 22.15 radiation 1.0 1440 > th dose independent rect. 15 15
441 22.15 precipitation 0.1 43200 > th dose dependent rect. 8 14
453 22.16 precipitation 0.1 43200 > th dose dependent rect. 17 5
455 22.16 precipitation 0.1 43200 > th dose dependent rect. 14 8
484 22.17 radiation 1.0 720 < th dose dependent rect. 4 21
488 22.18 radiation 1.0 1440 < th dose independent rect. 8 22
507 22.19 precipitation 0.1 43200 > th dose dependent sin 21 NA
516 22.19 radiation 1.0 1440 < th dose dependent rect. 14 21
517 22.20 humidity 80.0 14400 < th dose independent rect. 18 1
518 22.20 wind 9.0 14400 > th dose independent rect. 15 2
533 22.20 temperature 30.0 720 < th dose dependent rect. 4 2
547 22.20 temperature 20.0 30 > th dose dependent rect. 1 14
550 22.20 temperature 25.0 270 > th dose dependent rect. 19 16
557 22.21 wind 9.0 14400 < th dose independent rect. 15 2
560 22.21 radiation 1.0 1440 > th dose independent rect. 8 22
569 22.21 radiation 1.0 720 < th dose dependent rect. 4 9
600 22.22 radiation 1.0 1440 < th dose dependent rect. 5 19
652 22.24 humidity 90.0 720 > th dose dependent sin 22 NA
653 22.24 radiation 1.0 1440 < th dose dependent no NA NA
654 22.24 wind 9.0 14400 > th dose dependent rect. 13 4
699 22.25 radiation 1.0 720 < th dose dependent rect. 4 6
737 22.27 radiation 1.0 720 < th dose dependent rect. 5 1
770 22.28 temperature 20.0 10 > th dose dependent rect. 1 22
773 22.29 temperature 25.0 1440 > th dose independent rect. 18 2
780 22.29 temperature 30.0 720 < th dose dependent rect. 3 5
810 22.30 radiation 1.0 1440 < th dose independent rect. 16 8
819 22.30 temperature 20.0 720 > th dose dependent rect. 1 10
823 22.30 temperature 20.0 720 > th dose dependent rect. 24 12
837 22.31 temperature 25.0 1440 < th dose independent rect. 18 2
850 22.31 wind 9.0 14400 > th dose dependent sin 4 NA
853 22.31 radiation 1.0 720 < th dose dependent sin 11 NA
874 22.32 radiation 1.0 1440 < th dose independent sin 15 NA
877 22.32 radiation 1.0 14400 < th dose independent rect. 17 1
914 22.33 radiation 20.0 14400 < th dose independent rect. 12 1
917 22.33 precipitation 0.1 43200 > th dose independent rect. 14 8
942 22.34 precipitation 0.1 43200 > th dose independent rect. 17 5
949 22.34 precipitation 0.1 43200 < th dose independent rect. 14 8
952 22.34 humidity 80.0 14400 > th dose independent rect. 15 10
953 22.34 radiation 1.0 1440 < th dose independent rect. 8 10
962 22.34 radiation 10.0 14400 < th dose independent rect. 12 19
968 22.34 humidity 80.0 43200 > th dose dependent rect. 19 2
972 22.34 precipitation 0.1 43200 < th dose dependent rect. 14 8
999 22.35 precipitation 0.1 43200 < th dose independent rect. 17 5