BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0539400 Os10g0539400|AK071222
         (351 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0539400  Similar to MCE-FAMILY PROTEIN MCE2C                 532   e-151

>Os10g0539400 Similar to MCE-FAMILY PROTEIN MCE2C
          Length = 351

 Score =  532 bits (1370), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/335 (82%), Positives = 276/335 (82%)

Query: 17  LFVPMGLAGWHLSRNKVLFFSGALFVSLAVGVXXXXXXXXXXXXXXXXXXXXXXIXXXXX 76
           LFVPMGLAGWHLSRNKVLFFSGALFVSLAVGV                      I     
Sbjct: 17  LFVPMGLAGWHLSRNKVLFFSGALFVSLAVGVHLSPYLPSLPHLLLAASFHPHPISSSSS 76

Query: 77  XXXXXXXCVPLLHRVSWADAGGESGVGRAWAWPPSLASTCGLARLSRDDASLLLNGSWVM 136
                  CVPLLHRVSWADAGGESGVGRAWAWPPSLASTCGLARLSRDDASLLLNGSWVM
Sbjct: 77  SSAASSSCVPLLHRVSWADAGGESGVGRAWAWPPSLASTCGLARLSRDDASLLLNGSWVM 136

Query: 137 VAGDSQXXXXXXXXXXXXXXXXXXXXXXXXXFRRHSDYRATVPARGISVDFVWAPFESNL 196
           VAGDSQ                         FRRHSDYRATVPARGISVDFVWAPFESNL
Sbjct: 137 VAGDSQARLLVLALLRLLLDPAAAAAAEPELFRRHSDYRATVPARGISVDFVWAPFESNL 196

Query: 197 TRLLHEDLRLAPRTPDVLVLGSGLWHMLHVTDAARYGDALASVVDAAKSLRSPLPVPPPH 256
           TRLLHEDLRLAPRTPDVLVLGSGLWHMLHVTDAARYGDALASVVDAAKSLRSPLPVPPPH
Sbjct: 197 TRLLHEDLRLAPRTPDVLVLGSGLWHMLHVTDAARYGDALASVVDAAKSLRSPLPVPPPH 256

Query: 257 MFWLGLPLLVNHMLNTDAKKVHMNDTILQAYDLEVEQRGLLQRDGGPFLLLDVGKLSRGC 316
           MFWLGLPLLVNHMLNTDAKKVHMNDTILQAYDLEVEQRGLLQRDGGPFLLLDVGKLSRGC
Sbjct: 257 MFWLGLPLLVNHMLNTDAKKVHMNDTILQAYDLEVEQRGLLQRDGGPFLLLDVGKLSRGC 316

Query: 317 GQQCTADGMHYDGDVYDAVLHIMLNALVIESQQRI 351
           GQQCTADGMHYDGDVYDAVLHIMLNALVIESQQRI
Sbjct: 317 GQQCTADGMHYDGDVYDAVLHIMLNALVIESQQRI 351



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,664,461
Number of extensions: 425531
Number of successful extensions: 1872
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1870
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,709,973
Effective search space: 2915783277
Effective search space used: 2915783277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)