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Os10g0532300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0293) R2 : 0.742
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.73 (0.0699) R2dC : 0.353 R2C : 0.312
β3 : -2.32 (0.0845) R2dE : 0.426 R2E : 0.388
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.102 (0.0616) R2dN8 : 0.00214 R2N8 : 0.00245
σ : 0.55
deviance : 139.44
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_____
C
peak time of C : 11.5
E
wheather : radiation
threshold : 0.1111
memory length : 259
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 11.1
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.37 0.53 12 0.31 1.81 -2.35 1.4 -0.649 -0.0765 11.6 0.1126 251 11.3 --
128.02 0.527 12 0.313 1.79 -2.32 1.33 -- -0.0855 11.4 0.1101 249 11.1 --
135.24 0.542 12 0.387 1.75 -2.34 -- -0.196 -0.0698 11.5 0.07749 257 11.1 --
135.31 0.542 12 0.395 1.76 -2.34 -- -- -0.0722 11.5 0.08 257 11.2 --
190.83 0.643 12.1 0.194 -- -2.46 -- -1.56 -0.173 -- -35.15 463 13.5 --
190.83 0.648 12 0.152 2.47 -- 1.56 -- -0.17 8.39 -- -- -- --
198.38 0.66 12 0.198 2.47 -- -- -- -0.171 8.33 -- -- -- --
198.38 0.656 12.1 0.197 -- -2.46 -- -- -0.171 -- -34.95 464 13.5 --
139.44 0.55 12 -- 1.73 -2.32 -- -- -0.102 11.5 0.1111 259 11.1 --
536.4 1.08 12.1 0.213 -- -- -- -- -0.145 -- -- -- -- --
199.41 0.661 12 -- 2.47 -- -- -- -0.193 8.33 -- -- -- --
199.41 0.658 12.1 -- -- -2.46 -- -- -0.193 -- -30.95 91 10.4 --
537.6 1.08 12.1 -- -- -- -- -- -0.168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 131.76 radiation 1.0 270 < th dose dependent sin 17 NA
2 132.09 temperature 10.0 270 > th dose dependent rect. 14 15
3 132.38 radiation 1.0 270 < th dose dependent rect. 14 11
9 133.18 radiation 1.0 270 < th dose independent rect. 14 11
23 134.10 radiation 1.0 270 > th dose independent sin 17 NA
32 134.50 radiation 1.0 270 < th dose independent sin 16 NA
51 136.06 radiation 1.0 270 > th dose independent rect. 15 2
55 136.39 precipitation 0.1 270 < th dose independent rect. 14 15
56 136.39 precipitation 0.1 270 < th dose dependent rect. 14 15
58 136.47 temperature 15.0 270 > th dose independent rect. 5 9
60 136.63 radiation 1.0 270 > th dose independent rect. 14 5
75 136.93 precipitation 0.1 270 < th dose independent rect. 5 9
76 136.93 precipitation 0.1 270 < th dose dependent rect. 5 9
80 137.12 radiation 1.0 270 > th dose independent rect. 4 10
92 137.27 wind 9.0 270 < th dose independent rect. 5 9
93 137.31 wind 9.0 270 < th dose independent rect. 14 15
96 137.47 atmosphere 995.0 270 > th dose independent rect. 5 9
97 137.47 atmosphere 1015.0 270 < th dose independent rect. 5 9
98 137.47 temperature 10.0 270 > th dose independent rect. 14 15
109 137.51 temperature 30.0 270 < th dose independent rect. 18 7
115 137.74 humidity 60.0 270 > th dose independent rect. 18 7
122 138.24 temperature 25.0 270 > th dose independent rect. 13 6
123 138.33 radiation 20.0 10 < th dose dependent rect. 2 18
130 138.67 temperature 25.0 270 > th dose independent rect. 15 2
131 138.68 temperature 25.0 270 > th dose independent rect. 14 4
137 138.91 temperature 10.0 270 > th dose dependent rect. 13 6
149 139.08 wind 9.0 270 < th dose independent rect. 18 7
152 139.11 humidity 50.0 270 > th dose dependent rect. 18 6
154 139.15 temperature 10.0 270 > th dose independent rect. 18 7
156 139.15 radiation 20.0 270 < th dose independent rect. 18 7
159 139.15 temperature 10.0 270 > th dose independent rect. 1 17
160 139.15 atmosphere 1015.0 270 < th dose independent rect. 1 17
167 139.48 radiation 20.0 30 < th dose independent rect. 2 18
170 139.56 wind 9.0 270 < th dose independent rect. 1 17
173 139.60 temperature 10.0 270 > th dose dependent rect. 15 2
176 139.66 atmosphere 995.0 270 > th dose independent rect. 18 7
192 139.96 temperature 30.0 270 < th dose dependent rect. 18 5
198 140.02 humidity 90.0 270 < th dose independent rect. 15 2
212 140.15 wind 1.0 270 > th dose independent rect. 11 8
219 140.24 atmosphere 995.0 270 > th dose independent rect. 1 17
229 140.37 radiation 40.0 270 < th dose dependent rect. 23 10
259 140.69 wind 7.0 270 < th dose independent rect. 19 18
261 140.72 wind 1.0 270 > th dose independent rect. 13 6
280 140.89 temperature 30.0 90 < th dose dependent rect. 19 7
287 141.01 wind 9.0 270 < th dose independent rect. 17 22
288 141.02 precipitation 0.1 270 < th dose independent rect. 15 2
289 141.02 precipitation 0.1 270 < th dose dependent rect. 15 2
301 141.22 wind 9.0 270 < th dose independent rect. 15 2
305 141.30 precipitation 0.1 270 < th dose independent rect. 1 17
306 141.30 precipitation 0.1 270 < th dose dependent rect. 1 17
311 141.37 wind 9.0 10 < th dose independent rect. 20 6
312 141.39 temperature 10.0 10 > th dose independent rect. 20 6
313 141.39 temperature 30.0 10 < th dose independent rect. 20 6
314 141.39 humidity 50.0 10 > th dose independent rect. 20 6
317 141.39 atmosphere 995.0 10 > th dose independent rect. 20 6
318 141.39 radiation 1.0 10 < th dose independent rect. 20 6
323 141.39 temperature 10.0 10 > th dose independent rect. 2 18
325 141.39 atmosphere 1015.0 10 < th dose independent rect. 2 18
326 141.39 radiation 1.0 10 < th dose dependent rect. 20 6
331 141.42 temperature 10.0 270 > th dose independent rect. 15 2
333 141.42 atmosphere 1010.0 270 < th dose independent rect. 15 2
335 141.42 temperature 10.0 270 > th dose independent rect. 17 22
352 141.56 wind 7.0 270 < th dose independent rect. 19 16
353 141.57 radiation 40.0 270 < th dose independent rect. 15 2
377 141.71 temperature 30.0 10 < th dose dependent rect. 20 6
387 141.85 atmosphere 995.0 270 > th dose independent rect. 14 15
409 142.06 wind 1.0 270 > th dose independent rect. 15 2
411 142.06 atmosphere 1015.0 270 < th dose independent rect. 23 20
427 142.16 humidity 70.0 270 > th dose independent rect. 19 4
453 142.22 wind 9.0 270 < th dose independent rect. 13 6
465 142.34 radiation 40.0 270 < th dose independent rect. 14 15
476 142.39 precipitation 0.1 30 < th dose independent rect. 2 18
478 142.39 precipitation 0.1 30 < th dose dependent rect. 2 18
484 142.43 wind 9.0 270 < th dose independent rect. 19 4
508 142.46 wind 9.0 10 < th dose independent rect. 2 18
513 142.50 temperature 10.0 270 > th dose independent rect. 19 4
515 142.50 humidity 50.0 270 > th dose independent rect. 19 4
516 142.50 atmosphere 995.0 270 > th dose independent rect. 19 4
517 142.50 radiation 1.0 270 < th dose independent rect. 19 4
522 142.50 temperature 10.0 270 > th dose independent rect. 13 6
524 142.50 atmosphere 1010.0 270 < th dose independent rect. 13 6
526 142.50 temperature 10.0 270 > th dose independent rect. 19 18
527 142.50 atmosphere 995.0 270 > th dose independent rect. 19 18
528 142.50 temperature 10.0 270 > th dose independent rect. 23 20
534 142.51 atmosphere 995.0 270 > th dose independent rect. 15 2
632 142.90 wind 9.0 270 < th dose independent rect. 23 20
634 142.93 atmosphere 1010.0 270 < th dose independent rect. 23 8
642 143.01 precipitation 0.1 270 < th dose independent rect. 13 6
643 143.01 precipitation 0.1 270 < th dose dependent rect. 13 6
652 143.10 radiation 20.0 30 < th dose independent rect. 24 20
657 143.18 radiation 10.0 270 < th dose independent rect. 24 8
661 143.20 wind 9.0 270 < th dose dependent rect. 6 8
672 143.26 humidity 90.0 270 < th dose independent rect. 13 6
673 143.26 atmosphere 1015.0 270 < th dose independent rect. 14 15
685 143.32 precipitation 0.1 10 < th dose independent rect. 20 6
687 143.32 precipitation 0.1 10 < th dose dependent rect. 20 6
701 143.40 atmosphere 995.0 10 > th dose independent rect. 2 18
707 143.46 atmosphere 995.0 270 > th dose independent rect. 13 6
715 143.51 temperature 10.0 1440 > th dose independent rect. 21 6
718 143.51 temperature 30.0 1440 < th dose independent rect. 21 6
722 143.51 humidity 50.0 1440 > th dose independent rect. 21 6
728 143.51 atmosphere 995.0 1440 > th dose independent rect. 21 6
729 143.51 radiation 1.0 1440 < th dose independent rect. 21 6
749 143.51 temperature 10.0 1440 > th dose independent rect. 3 18
754 143.52 radiation 30.0 1440 < th dose dependent rect. 21 6
773 143.70 precipitation 0.1 90 < th dose independent rect. 19 7
776 143.70 precipitation 0.1 90 < th dose dependent rect. 19 7
781 143.75 humidity 50.0 10 > th dose dependent rect. 20 6
792 143.82 temperature 10.0 270 > th dose independent rect. 11 8
793 143.82 atmosphere 1015.0 270 < th dose independent rect. 11 8
794 143.82 temperature 10.0 270 > th dose independent rect. 19 16
795 143.82 atmosphere 995.0 270 > th dose independent rect. 19 16
804 143.86 wind 9.0 270 < th dose independent rect. 11 8
814 143.94 radiation 10.0 270 < th dose dependent rect. 24 13
868 144.15 temperature 30.0 270 < th dose dependent rect. 21 1
870 144.17 wind 7.0 10 < th dose independent rect. 20 18
922 144.37 temperature 10.0 10 > th dose dependent rect. 16 14
923 144.38 humidity 50.0 270 > th dose dependent rect. 23 10
945 144.55 atmosphere 1015.0 270 < th dose dependent rect. 15 2
970 144.70 precipitation 0.1 270 < th dose independent rect. 11 8
971 144.70 precipitation 0.1 270 < th dose dependent rect. 11 8
989 144.77 temperature 15.0 270 > th dose independent rect. 7 16