BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0532300 Os10g0532300|AK069934
         (179 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01490.1  | chr1:180401-182066 REVERSE LENGTH=178               85   2e-17
AT1G63950.1  | chr1:23735000-23735556 FORWARD LENGTH=114           48   3e-06
AT5G52760.1  | chr5:21386919-21387540 FORWARD LENGTH=127           47   4e-06
AT5G23760.1  | chr5:8013242-8014129 REVERSE LENGTH=104             46   1e-05

>AT1G01490.1 | chr1:180401-182066 REVERSE LENGTH=178
          Length = 177

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 3  KKIVVKLNVHDKAEKQKAMKAVSALIGIDELSMDMASQKMTVIGMVDPVNVVSKLRKSWA 62
          KKIV+KL++HD   KQKA+K VS L GID ++MDM  +K+TVIG VDPVNVVSKLRK W 
Sbjct: 2  KKIVLKLDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWP 61

Query: 63 AT 64
           T
Sbjct: 62 MT 63



>AT1G63950.1 | chr1:23735000-23735556 FORWARD LENGTH=114
          Length = 113

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 5  IVVKLNVHDKAEKQKAMKAVSALIGIDELSMDMASQKMTVIGMVDPVNVVSKLRKSWA 62
          ++V + V+D+  K K  K++S L GI    MD+    + V+G VDPV +V  LRK W 
Sbjct: 1  MIVWMGVYDQRSKGKITKSISDLPGIHSSYMDLKEGTLVVMGDVDPVELVRNLRKKWG 58



>AT5G52760.1 | chr5:21386919-21387540 FORWARD LENGTH=127
          Length = 126

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 2  SKKIVVKLNVHDKAEKQKAMKAVSALIGIDELSMDMASQKMTVIGMVDPVNVVSKLRKSW 61
          +K  V++L++H++  ++KA+  VS   G+  ++MD  S KMT++G VD   VV KLRK  
Sbjct: 3  AKNAVLQLSIHEERTRKKALVTVSRFSGVTSITMD-KSGKMTIVGEVDVPAVVMKLRKLC 61

Query: 62 AATIESV 68
             I SV
Sbjct: 62 NTEIVSV 68



>AT5G23760.1 | chr5:8013242-8014129 REVERSE LENGTH=104
          Length = 103

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 1  MSKKIVVK-LNVHDKAEKQKAMKAVSALIGIDELSMDMASQKMTVIGMVD 49
          M++K+V+K L + D   KQKA++A + + G+D ++ DM  QK+TVIG++D
Sbjct: 1  MAQKVVLKVLTMTDDKTKQKAIEAAADIFGVDSIAADMKDQKLTVIGLMD 50



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,299,298
Number of extensions: 56953
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 5
Length of query: 179
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 87
Effective length of database: 8,584,297
Effective search space: 746833839
Effective search space used: 746833839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)