Os10g0524300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidoglycan-binding LysM domain containing protein.
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Os10g0524300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidoglycan-binding LysM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.98 | 0.747 | 9.86 | 1.87 | 4.71 | -2.67 | 2.74 | -0.288 | -0.0928 | 19.7 | 10.42 | 75 | 5.03 | 18.3 |
| 252.91 | 0.741 | 9.87 | 1.88 | 4.71 | -2.68 | 2.7 | -- | -0.0909 | 19.7 | 10.21 | 72 | 5.02 | 18.4 |
| 273.63 | 0.77 | 9.87 | 1.88 | 4.69 | -2.67 | -- | -0.182 | -0.114 | 19.7 | 10.85 | 65 | 5.03 | 18.5 |
| 270.87 | 0.767 | 9.88 | 1.76 | 4.62 | -2.54 | -- | -- | -0.2 | 19.7 | 9.316 | 31 | 5.03 | 18.7 |
| 921.73 | 1.42 | 9.79 | 1.62 | -- | -2.83 | -- | -1.44 | -0.328 | -- | -21.36 | 2 | 3.02 | 16.7 |
| 337.73 | 0.862 | 9.91 | 1.56 | 4.45 | -- | 2.38 | -- | -0.36 | 21.2 | -- | -- | -- | -- |
| 357.7 | 0.886 | 9.91 | 1.48 | 4.44 | -- | -- | -- | -0.362 | 21.2 | -- | -- | -- | -- |
| 537.46 | 1.08 | 9.86 | 1.57 | -- | -3.49 | -- | -- | -0.483 | -- | -16.7 | 45 | 3.53 | 12.9 |
| 353.43 | 0.876 | 9.92 | -- | 4.51 | -2.09 | -- | -- | -0.258 | 20 | 8.456 | 29 | 5.05 | 18.7 |
| 1499.06 | 1.81 | 9.79 | 1.49 | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
| 415.06 | 0.953 | 9.95 | -- | 4.44 | -- | -- | -- | -0.526 | 21.2 | -- | -- | -- | -- |
| 414.26 | 0.948 | 9.75 | -- | -- | -4.1 | -- | -- | -0.399 | -- | -15.94 | 166 | 3.2 | 9.62 |
| 1557.55 | 1.84 | 9.83 | -- | -- | -- | -- | -- | -0.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.88 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 4 | 258.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 34 | 269.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 66 | 277.28 | radiation | 1 | 30 | > th | dose independent | sin | 6 | NA |
| 70 | 277.73 | radiation | 1 | 30 | < th | dose independent | sin | 6 | NA |
| 74 | 277.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 79 | 278.08 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 84 | 278.21 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 12 |
| 85 | 278.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 108 | 279.60 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 110 | 279.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 147 | 280.33 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 150 | 280.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 196 | 281.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 197 | 281.11 | radiation | 1 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 293 | 281.80 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 331 | 281.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 335 | 282.02 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 347 | 282.09 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 408 | 282.61 | radiation | 1 | 30 | < th | dose dependent | sin | 5 | NA |
| 409 | 282.61 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 416 | 282.66 | radiation | 1 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 541 | 283.16 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 544 | 283.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 557 | 283.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 567 | 283.21 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 18 |
| 568 | 283.21 | temperature | 20 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 638 | 283.34 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 651 | 283.39 | radiation | 1 | 30 | < th | dose independent | rect. | 22 | 21 |
| 655 | 283.40 | radiation | 1 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 666 | 283.46 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 667 | 283.46 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 681 | 283.51 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 717 | 283.66 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 782 | 283.90 | wind | 7 | 270 | < th | dose independent | rect. | 3 | 19 |
| 918 | 284.26 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 973 | 284.38 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 21 |
| 979 | 284.39 | temperature | 20 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 996 | 284.41 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 22 |