BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0524300 Os10g0524300|AK063244
         (108 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0524300  Peptidoglycan-binding LysM domain containing p...   120   2e-28
Os03g0118450  Peptidoglycan-binding LysM domain containing p...   102   6e-23
Os04g0572800                                                       90   4e-19

>Os10g0524300 Peptidoglycan-binding LysM domain containing protein
          Length = 108

 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 54  PCEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKITPRPGRRN 108
           PCEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKITPRPGRRN
Sbjct: 54  PCEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKITPRPGRRN 108



>Os03g0118450 Peptidoglycan-binding LysM domain containing protein
          Length = 122

 Score =  102 bits (254), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/48 (95%), Positives = 47/48 (97%)

Query: 55  CEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKITP 102
           CEEIYVV EGETLHSISD+CGDPYILEQNPHVHDPDDVFPGLVIKITP
Sbjct: 71  CEEIYVVAEGETLHSISDKCGDPYILEQNPHVHDPDDVFPGLVIKITP 118



>Os04g0572800 
          Length = 119

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 46/49 (93%)

Query: 54  PCEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKITP 102
           PCEE+YVV EGETLH+ISD+CGDP+I+E+NPH+HDPDDVFPGLVI + P
Sbjct: 66  PCEEVYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIALRP 114



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,639,602
Number of extensions: 86474
Number of successful extensions: 200
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 3
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)