Os10g0508500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tubulin folding cofactor D.
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Os10g0508500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tubulin folding cofactor D.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.88 | 0.438 | 6.67 | 0.643 | 0.394 | -0.588 | -0.575 | -1.3 | 0.375 | 20.9 | 68 | 1878 | -- | -- |
| 89.27 | 0.44 | 6.67 | 0.733 | 0.41 | -0.649 | -0.71 | -- | 0.346 | 20.6 | 67 | 1898 | -- | -- |
| 87.9 | 0.437 | 6.68 | 0.659 | 0.411 | -0.593 | -- | -1.43 | 0.377 | 20.8 | 68 | 1913 | -- | -- |
| 90.92 | 0.444 | 6.67 | 0.759 | 0.41 | -0.666 | -- | -- | 0.351 | 20.7 | 67 | 1881 | -- | -- |
| 95.07 | 0.454 | 6.67 | 0.599 | -- | -0.416 | -- | -1.69 | 0.371 | -- | 67.43 | 2747 | -- | -- |
| 102.17 | 0.474 | 6.65 | 0.645 | 0.294 | -- | -0.717 | -- | 0.422 | 21.5 | -- | -- | -- | -- |
| 104.05 | 0.478 | 6.65 | 0.671 | 0.296 | -- | -- | -- | 0.423 | 21.7 | -- | -- | -- | -- |
| 97.84 | 0.461 | 6.65 | 0.787 | -- | -0.536 | -- | -- | 0.392 | -- | 67.25 | 1388 | -- | -- |
| 105.7 | 0.479 | 6.69 | -- | 0.394 | -0.589 | -- | -- | 0.238 | 21.1 | 66 | 1933 | -- | -- |
| 109.25 | 0.488 | 6.64 | 0.673 | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
| 115.91 | 0.504 | 6.67 | -- | 0.298 | -- | -- | -- | 0.348 | 21.8 | -- | -- | -- | -- |
| 112.4 | 0.494 | 6.69 | -- | -- | -0.565 | -- | -- | 0.224 | -- | 65.58 | 2999 | -- | -- |
| 121.2 | 0.514 | 6.66 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 4 | 80.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 5 | 80.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 10 | 80.50 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 11 | 80.57 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 17 | 80.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 26 | 80.88 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 31 | 80.96 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 50 | 81.16 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 135 | 81.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 136 | 81.94 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 147 | 81.99 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 158 | 82.07 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 172 | 82.17 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 173 | 82.17 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 187 | 82.23 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 193 | 82.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 198 | 82.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 204 | 82.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 206 | 82.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 210 | 82.35 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 226 | 82.42 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 227 | 82.43 | wind | 3.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 232 | 82.44 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 238 | 82.48 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 251 | 82.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 256 | 82.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 268 | 82.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 270 | 82.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 275 | 82.64 | wind | 3.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 279 | 82.66 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 302 | 82.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 315 | 82.81 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 356 | 82.94 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 376 | 83.01 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 378 | 83.02 | wind | 9.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 380 | 83.02 | wind | 9.0 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 412 | 83.15 | wind | 9.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 435 | 83.22 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 439 | 83.23 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 443 | 83.25 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 449 | 83.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 467 | 83.30 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 13 |
| 484 | 83.34 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 493 | 83.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 497 | 83.36 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 520 | 83.39 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 530 | 83.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 534 | 83.42 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 555 | 83.46 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 568 | 83.50 | wind | 1.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 571 | 83.51 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 611 | 83.58 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 632 | 83.60 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 680 | 83.68 | wind | 9.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 693 | 83.70 | wind | 9.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 736 | 83.79 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 756 | 83.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 825 | 83.97 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 831 | 83.98 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 833 | 83.98 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 835 | 83.98 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 847 | 84.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 865 | 84.04 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 896 | 84.10 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 904 | 84.12 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 906 | 84.12 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 944 | 84.18 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |