BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0508500 Os10g0508500|Os10g0508500
(1244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0508500 Similar to Tubulin folding cofactor D 2358 0.0
>Os10g0508500 Similar to Tubulin folding cofactor D
Length = 1244
Score = 2358 bits (6110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1160/1244 (93%), Positives = 1160/1244 (93%)
Query: 1 MEETAAIRTSGIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHDSKEVVLRRYFIQE 60
MEETAAIRTSGIP EHDSKEVVLRRYFIQE
Sbjct: 1 MEETAAIRTSGIPVSVSSTASADGDASADPTASAAAAAATVGDDEHDSKEVVLRRYFIQE 60
Query: 61 WEIVSDILRRIVDAGGVAEPADVQRIRSIMDKYQEEGQLLEPYLESIISPLMLLVRSKTM 120
WEIVSDILRRIVDAGGVAEPADVQRIRSIMDKYQEEGQLLEPYLESIISPLMLLVRSKTM
Sbjct: 61 WEIVSDILRRIVDAGGVAEPADVQRIRSIMDKYQEEGQLLEPYLESIISPLMLLVRSKTM 120
Query: 121 ELGACTDELLDIIKPLCIIIYTLVTVCGYKSVIKFFPHQVSDLEPAVALLEECHKMSSAT 180
ELGACTDELLDIIKPLCIIIYTLVTVCGYKSVIKFFPHQVSDLEPAVALLEECHKMSSAT
Sbjct: 121 ELGACTDELLDIIKPLCIIIYTLVTVCGYKSVIKFFPHQVSDLEPAVALLEECHKMSSAT 180
Query: 181 ALRQESTGEMETKCXXXXXXXXXXXXPFDISSVDTSIATADHVDGPETVPLVTRILDICK 240
ALRQESTGEMETKC PFDISSVDTSIATADHVDGPETVPLVTRILDICK
Sbjct: 181 ALRQESTGEMETKCVVLLWLYILVLIPFDISSVDTSIATADHVDGPETVPLVTRILDICK 240
Query: 241 DYLCSSGPMRRMSGLLLARLLTRPDMPKVFSSFMEWAQRILLSVTDDFVDQFRSIGIVEA 300
DYLCSSGPMRRMSGLLLARLLTRPDMPKVFSSFMEWAQRILLSVTDDFVDQFRSIGIVEA
Sbjct: 241 DYLCSSGPMRRMSGLLLARLLTRPDMPKVFSSFMEWAQRILLSVTDDFVDQFRSIGIVEA 300
Query: 301 LASIFKIGNRKVLCDAVSGIWNDCSVVMKTNIASRSSLLRKFLVKLAQRVALISLPPRSP 360
LASIFKIGNRKVLCDAVSGIWNDCSVVMKTNIASRSSLLRKFLVKLAQRVALISLPPRSP
Sbjct: 301 LASIFKIGNRKVLCDAVSGIWNDCSVVMKTNIASRSSLLRKFLVKLAQRVALISLPPRSP 360
Query: 361 SWRYQSISSSLGANLXXXXXXXXXXXXXXKQVNIDQTDTSSLEEDMDVPEIVEEIIDLLL 420
SWRYQSISSSLGANL KQVNIDQTDTSSLEEDMDVPEIVEEIIDLLL
Sbjct: 361 SWRYQSISSSLGANLSTSTDGTGTSSGSTKQVNIDQTDTSSLEEDMDVPEIVEEIIDLLL 420
Query: 421 TGLRDSDTIVRWSAAKGVGRITARLTPALSEEVLSSILQLFSPGEGDGSWHXXXXXXXXX 480
TGLRDSDTIVRWSAAKGVGRITARLTPALSEEVLSSILQLFSPGEGDGSWH
Sbjct: 421 TGLRDSDTIVRWSAAKGVGRITARLTPALSEEVLSSILQLFSPGEGDGSWHGGCLALAEL 480
Query: 481 XXXXXXXPSSFPDVIPVIIKALHYDVRRGPHSIGSHVNCRRAASAAFQENVGRQGNFPHG 540
PSSFPDVIPVIIKALHYDVRRGPHSIGSHVNCRRAASAAFQENVGRQGNFPHG
Sbjct: 481 ARRGLLLPSSFPDVIPVIIKALHYDVRRGPHSIGSHVNCRRAASAAFQENVGRQGNFPHG 540
Query: 541 IDIVNAADYFALASRSNSYLNVAVFVAQYKEYLHPFAEELLCNKISHWERSLRELAAQAL 600
IDIVNAADYFALASRSNSYLNVAVFVAQYKEYLHPFAEELLCNKISHWERSLRELAAQAL
Sbjct: 541 IDIVNAADYFALASRSNSYLNVAVFVAQYKEYLHPFAEELLCNKISHWERSLRELAAQAL 600
Query: 601 SMLVQYDMNYFAGYALEKLVPCTLSSDLCTRHGATLAAGEIALKLYQLGFTFTTDMQKAL 660
SMLVQYDMNYFAGYALEKLVPCTLSSDLCTRHGATLAAGEIALKLYQLGFTFTTDMQKAL
Sbjct: 601 SMLVQYDMNYFAGYALEKLVPCTLSSDLCTRHGATLAAGEIALKLYQLGFTFTTDMQKAL 660
Query: 661 SGIVPAIEKARLYRGKGGEIMRSAVSRFIACISMSGISLNEKTKRSLLETLNENLRHPNA 720
SGIVPAIEKARLYRGKGGEIMRSAVSRFIACISMSGISLNEKTKRSLLETLNENLRHPNA
Sbjct: 661 SGIVPAIEKARLYRGKGGEIMRSAVSRFIACISMSGISLNEKTKRSLLETLNENLRHPNA 720
Query: 721 QIQCAAVDALKHFIPTYLVSSGEKTANGIITKYLTLLDDPNVXXXXXXXXXXXTLPYEFL 780
QIQCAAVDALKHFIPTYLVSSGEKTANGIITKYLTLLDDPNV TLPYEFL
Sbjct: 721 QIQCAAVDALKHFIPTYLVSSGEKTANGIITKYLTLLDDPNVAARRGAALALGTLPYEFL 780
Query: 781 VLKWMPVISKLCSSCTIEDKPDDPDAEARVNSVRGLILVCETLTASVEHSSSFGDSMYSY 840
VLKWMPVISKLCSSCTIEDKPDDPDAEARVNSVRGLILVCETLTASVEHSSSFGDSMYSY
Sbjct: 781 VLKWMPVISKLCSSCTIEDKPDDPDAEARVNSVRGLILVCETLTASVEHSSSFGDSMYSY 840
Query: 841 IKDKVMQALFRALDDYAVDNRGDVGSWVREAAMDALERCTFILCKRDNIAVKITPVAEHE 900
IKDKVMQALFRALDDYAVDNRGDVGSWVREAAMDALERCTFILCKRDNIAVKITPVAEHE
Sbjct: 841 IKDKVMQALFRALDDYAVDNRGDVGSWVREAAMDALERCTFILCKRDNIAVKITPVAEHE 900
Query: 901 SKSIDIDTNAVNTRCQLFDSSIAQDLVAGIAKQAVEKIDKIREIAVKTLKRILYNEELFV 960
SKSIDIDTNAVNTRCQLFDSSIAQDLVAGIAKQAVEKIDKIREIAVKTLKRILYNEELFV
Sbjct: 901 SKSIDIDTNAVNTRCQLFDSSIAQDLVAGIAKQAVEKIDKIREIAVKTLKRILYNEELFV 960
Query: 961 PSIPYRELLEQIIPNSADLEWAVPAVSYPRFVKLLQVSCYSKPVLSGLVISTGGLQESLR 1020
PSIPYRELLEQIIPNSADLEWAVPAVSYPRFVKLLQVSCYSKPVLSGLVISTGGLQESLR
Sbjct: 961 PSIPYRELLEQIIPNSADLEWAVPAVSYPRFVKLLQVSCYSKPVLSGLVISTGGLQESLR 1020
Query: 1021 KASTSALVDYLQDSDINTNDEGKNREYLLSCDLLWVLEHYQKCDRVVTPTLKTVETLLSK 1080
KASTSALVDYLQDSDINTNDEGKNREYLLSCDLLWVLEHYQKCDRVVTPTLKTVETLLSK
Sbjct: 1021 KASTSALVDYLQDSDINTNDEGKNREYLLSCDLLWVLEHYQKCDRVVTPTLKTVETLLSK 1080
Query: 1081 KVFLREGHCEFYSGLIKSLGPELKGSKDFAKLSAGLSILGYISSQSDGNGSTAFSQLLTF 1140
KVFLREGHCEFYSGLIKSLGPELKGSKDFAKLSAGLSILGYISSQSDGNGSTAFSQLLTF
Sbjct: 1081 KVFLREGHCEFYSGLIKSLGPELKGSKDFAKLSAGLSILGYISSQSDGNGSTAFSQLLTF 1140
Query: 1141 LGHRYPKIRKAAADQVYLVLLQNDSLIAAENMEKAQEVIAETCWEGDVEEARRKRSELNE 1200
LGHRYPKIRKAAADQVYLVLLQNDSLIAAENMEKAQEVIAETCWEGDVEEARRKRSELNE
Sbjct: 1141 LGHRYPKIRKAAADQVYLVLLQNDSLIAAENMEKAQEVIAETCWEGDVEEARRKRSELNE 1200
Query: 1201 MAGFGAATSQKPGNEQTRRKTEERNAASTDENKSYSSLVDFSGY 1244
MAGFGAATSQKPGNEQTRRKTEERNAASTDENKSYSSLVDFSGY
Sbjct: 1201 MAGFGAATSQKPGNEQTRRKTEERNAASTDENKSYSSLVDFSGY 1244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 36,495,371
Number of extensions: 1391115
Number of successful extensions: 3724
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3722
Number of HSP's successfully gapped: 1
Length of query: 1244
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1132
Effective length of database: 11,187,833
Effective search space: 12664626956
Effective search space used: 12664626956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)