FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0498900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Microtubule-associated protein EB1-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.04 (0.078) R2 : 0.47
β1 : -6.42 (0.46) R2dD : 1.19 R2D : -0.711
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.28 (0.207) R2dE : 0.46 R2E : -0.0198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.5 (1.36) R2dD*E : 0.665 R2D*E : -0.673
γ1 : -0.611 (0.169) R2dN8 : 0.0415 R2N8 : -0.197
σ : 1.04
deviance : 502.68
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.1
memory length : 5773
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
494.26 1.04 5.03 -6.36 0.287 3.27 -1.23 -14.3 -0.574 8.7 27 5711 -- --
542.86 1.09 4.68 -5.36 0.0839 4.26 -0.693 -- -0.366 9.81 18.81 24587 -- --
497.04 1.04 5.03 -6.38 0.328 3.27 -- -14.4 -0.613 6.67 27.11 5792 -- --
541.25 1.08 4.7 -5.83 0.342 4.56 -- -- -0.5 7.29 18.9 26019 -- --
502.68 1.04 5.04 -6.42 -- 3.28 -- -14.5 -0.611 -- 27.1 5773 -- --
788.2 1.32 4.36 -1.15 0.24 -- -1.39 -- 1.05 8.99 -- -- -- --
792.92 1.32 4.36 -1.2 0.322 -- -- -- 1.04 6.63 -- -- -- --
546.27 1.09 4.72 -5.83 -- 4.59 -- -- -0.533 -- 18.97 26037 -- --
816.41 1.34 4.35 -- 0.335 0.713 -- -- 1.1 5.42 18.9 26019 -- --
798.32 1.32 4.36 -1.2 -- -- -- -- 1.05 -- -- -- -- --
831.13 1.35 4.33 -- 0.307 -- -- -- 1.17 6.86 -- -- -- --
689.26 1.22 4.47 -- -- 1.79 -- -- 0.569 -- 22.87 1468 -- --
836.08 1.35 4.33 -- -- -- -- -- 1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 442.49 wind 5 43200 < th dose independent rect. 11 4
2 442.83 wind 3 43200 > th dose dependent rect. 11 4
3 442.87 wind 5 43200 > th dose independent rect. 11 5
6 445.52 wind 5 43200 > th dose independent rect. 10 7
12 447.60 wind 3 43200 > th dose dependent rect. 10 6
17 449.69 wind 5 43200 > th dose dependent rect. 14 2
55 459.54 wind 9 43200 < th dose dependent rect. 11 4
91 463.72 wind 5 43200 < th dose independent sin 22 NA
93 463.91 wind 5 43200 > th dose independent sin 21 NA
123 466.40 radiation 20 43200 < th dose independent rect. 8 1
135 467.03 radiation 20 43200 < th dose independent rect. 4 5
136 467.03 radiation 20 43200 < th dose independent rect. 19 14
143 467.05 radiation 20 43200 < th dose independent rect. 23 10
153 467.30 wind 7 43200 < th dose independent rect. 5 12
175 468.81 wind 5 43200 > th dose dependent rect. 5 14
199 469.49 wind 5 43200 > th dose dependent sin 22 NA
218 470.28 humidity 90 43200 > th dose dependent rect. 10 16
227 470.54 humidity 90 43200 > th dose independent rect. 8 19
233 470.87 humidity 90 43200 > th dose independent sin 18 NA
239 471.01 humidity 90 43200 > th dose dependent rect. 8 19
241 471.04 humidity 90 43200 > th dose independent rect. 15 9
257 471.47 humidity 90 43200 > th dose independent rect. 12 13
267 471.69 humidity 90 43200 > th dose dependent rect. 5 22
271 471.77 humidity 90 43200 > th dose dependent sin 17 NA
272 471.77 humidity 90 43200 > th dose dependent rect. 3 22
282 472.09 humidity 90 43200 < th dose independent rect. 8 19
297 472.35 humidity 90 43200 > th dose dependent rect. 12 13
322 472.77 humidity 90 43200 > th dose independent rect. 2 23
342 473.02 humidity 90 43200 < th dose independent rect. 7 21
352 473.24 wind 7 43200 < th dose independent rect. 24 17
355 473.31 humidity 90 43200 > th dose dependent rect. 15 10
371 473.66 humidity 90 43200 < th dose independent rect. 10 16
373 473.73 humidity 90 43200 > th dose independent rect. 22 1
382 473.88 wind 7 43200 > th dose independent rect. 2 15
388 473.95 wind 1 43200 < th dose dependent rect. 24 2
405 474.28 humidity 90 43200 < th dose independent sin 17 NA
409 474.34 wind 7 43200 > th dose independent rect. 24 17
420 474.58 humidity 90 43200 > th dose dependent no NA NA
443 474.93 humidity 90 43200 > th dose dependent rect. 15 23
448 474.98 humidity 90 43200 > th dose dependent rect. 21 23
459 475.17 humidity 90 43200 < th dose independent rect. 12 13
463 475.23 humidity 90 43200 > th dose dependent rect. 9 23
465 475.26 humidity 90 43200 > th dose dependent rect. 19 23
490 475.53 humidity 90 43200 > th dose independent rect. 15 23
495 475.59 humidity 90 43200 > th dose independent no NA NA
519 475.93 humidity 90 43200 > th dose independent rect. 21 23
550 476.30 humidity 90 43200 > th dose independent rect. 18 1
610 477.06 humidity 90 43200 < th dose independent rect. 2 23
623 477.18 radiation 40 43200 < th dose independent rect. 9 2
627 477.20 humidity 90 43200 > th dose dependent rect. 22 1
685 478.01 humidity 90 43200 > th dose dependent sin 3 NA
686 478.02 humidity 90 43200 < th dose independent rect. 15 10
718 478.48 humidity 90 43200 < th dose independent rect. 24 23
790 479.34 humidity 90 43200 < th dose independent rect. 18 1
812 479.56 humidity 90 43200 < th dose independent rect. 15 23
842 479.80 humidity 90 43200 < th dose independent no NA NA
853 479.98 radiation 20 43200 < th dose independent sin 10 NA
858 480.05 humidity 90 43200 < th dose independent rect. 22 23
867 480.15 temperature 25 43200 > th dose dependent rect. 11 1
912 480.72 temperature 25 4320 > th dose dependent rect. 7 5
929 480.93 temperature 20 43200 > th dose dependent rect. 7 1