BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0498900 Os10g0498900|AK108732
(332 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67270.1 | chr5:26840248-26841984 REVERSE LENGTH=330 370 e-103
AT3G47690.1 | chr3:17581353-17583346 FORWARD LENGTH=277 297 4e-81
AT5G62500.1 | chr5:25092929-25095006 FORWARD LENGTH=294 296 8e-81
>AT5G67270.1 | chr5:26840248-26841984 REVERSE LENGTH=330
Length = 329
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/344 (57%), Positives = 236/344 (68%), Gaps = 37/344 (10%)
Query: 3 ASNIGMMDGAYFVGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVN 62
A+NIGMMD AYFVGR+EILAWIN+TLQL LSKVEEA SGAV CQLMD+ HPG VPMHKVN
Sbjct: 2 ATNIGMMDSAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGTVPMHKVN 61
Query: 63 FDAKTEYEMIQNYKVLQDVFNKLKITKHIEVNKLTKGRPLDNLEFMQWMKRYCDSVNGGF 122
FDAK+EYEMIQNYKVLQDVFNKLKITKHIEV+KL KGRPLDNLEFMQWMK+YCDSVNGG
Sbjct: 62 FDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKKYCDSVNGGQ 121
Query: 123 MNSYNASERRESSKGGKETNRRTSVPSQ------------APAKSSSATHKAQAS---SH 167
N Y+A ERRE+SKGGKE +R + Q + + + H+ Q++ +H
Sbjct: 122 HN-YHALERREASKGGKEATKRAAATQQSGKSSSSSAPPRPSSSNGTRKHEPQSNNTGTH 180
Query: 168 GAKKANGHXXXXXXXXXXXXXXXXXXGPAYDEQITELKLLVDSLEKERDFYFSKLRDVEI 227
+ N H PAYDE+ITELKL +DSLEKERDFYFSKLRDVEI
Sbjct: 181 HSSTGNHHHSSKPSAKQSKPV------PAYDEKITELKLYIDSLEKERDFYFSKLRDVEI 234
Query: 228 LCQSPEVEHLPIVNAIHKVLYAAEDDPSMVXXXXXXXXXXXXXXXPMLSPILEASEE-RP 286
LCQ+P+ EHLP+V +I ++LYAA+ + LSPI E SEE R
Sbjct: 235 LCQNPDTEHLPLVGSIKRILYAADGE------------DVGAAETQTLSPIAEGSEERRN 282
Query: 287 AKQEAHKRKSISDLELEEFGMAS-SSRQRLSDISDVQLCG-SPL 328
+ E+ KRK I +L+++ + + S RQRLSD SDV+ G SPL
Sbjct: 283 SVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCSGSSPL 326
>AT3G47690.1 | chr3:17581353-17583346 FORWARD LENGTH=277
Length = 276
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/254 (57%), Positives = 181/254 (71%), Gaps = 14/254 (5%)
Query: 3 ASNIGMMDGAYFVGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVN 62
A+NIGMMD AYFVGRNEIL WIN L L LS+VEEAASGAV CQ++D PG VPMHKVN
Sbjct: 2 ATNIGMMDSAYFVGRNEILTWINDRLHLNLSRVEEAASGAVQCQMLDMTFPGVVPMHKVN 61
Query: 63 FDAKTEYEMIQNYKVLQDVFNKLKITKHIEVNKLTKGRPLDNLEFMQWMKRYCDSVNGGF 122
FDAK EY+MIQNYKVLQDVFNKLKITK +E+N+L KGRPLDNLEF+QW+KR+CDS+NGG
Sbjct: 62 FDAKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKGRPLDNLEFLQWLKRFCDSINGGI 121
Query: 123 MN-SYNASERRESSKGGKETNRRTSVPSQAPAKSSSATHKAQASSHGAKKANGHXXXXXX 181
MN +YN ERR S+ GKE + + S ++++ +SS G KA+G
Sbjct: 122 MNENYNPVERR--SRNGKERSVKGSNKIPKSLQTNNNHPPPNSSSVGLSKASGPKSAKAA 179
Query: 182 XXXXXXXXXXXXGPAYDEQITELKLLVDSLEKERDFYFSKLRDVEILCQSPEVEHLPIVN 241
A +++ +LK+ D LEKERDFYFSKLRDVEILCQ+PE++ LPIV
Sbjct: 180 EVQ-----------ALSKELVDLKISTDLLEKERDFYFSKLRDVEILCQTPELDDLPIVV 228
Query: 242 AIHKVLYAAEDDPS 255
A+ K+LYA + + S
Sbjct: 229 AVKKILYATDANES 242
>AT5G62500.1 | chr5:25092929-25095006 FORWARD LENGTH=294
Length = 293
Score = 296 bits (759), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 145/259 (55%), Positives = 187/259 (72%), Gaps = 13/259 (5%)
Query: 3 ASNIGMMDGAYFVGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVN 62
A+NIGMMD AYFVGRNEIL+WIN L L LS++EEAASGAV CQ++D PG VPMHKVN
Sbjct: 2 ATNIGMMDSAYFVGRNEILSWINDRLHLNLSRIEEAASGAVQCQMLDMTFPGVVPMHKVN 61
Query: 63 FDAKTEYEMIQNYKVLQDVFNKLKITKHIEVNKLTKGRPLDNLEFMQWMKRYCDSVNGGF 122
F+AK EYEMIQNYKV+Q+VF KLKITK +EVN+L KGRPLDNLEF+QW+KR+CDS+NGG
Sbjct: 62 FEAKNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKGRPLDNLEFLQWLKRFCDSINGGI 121
Query: 123 MN-SYNASERRESSKGGKETNRRTSVPSQAPAKSSSATHKAQASSH---GAKKANGHXXX 178
MN +YN ERR S+GG+E + + S ++++ H A+S+ G K+A H
Sbjct: 122 MNENYNPVERR--SRGGREKSVKGSSKISKSLQTNNMHHPPVATSNKPAGPKQAKSHGIG 179
Query: 179 XXXXXXXXXXXXXXXGPAYDEQITELKLLVDSLEKERDFYFSKLRDVEILCQSPEVEHLP 238
A +++ +LK+ VD LEKERDFYFSKLRD+EILCQ+PE++ LP
Sbjct: 180 GGSNSSAEVQ-------ALSKEVEDLKVSVDLLEKERDFYFSKLRDIEILCQTPELDDLP 232
Query: 239 IVNAIHKVLYAAEDDPSMV 257
IV A+ K+LYA + + S++
Sbjct: 233 IVVAVKKILYATDANESVL 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,187,737
Number of extensions: 226056
Number of successful extensions: 628
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,392,385
Effective search space: 1955425705
Effective search space used: 1955425705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)