Os10g0497100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1). Splice isoform 2.
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Os10g0497100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.45 | 0.383 | 10 | -1.36 | 1.2 | 1.36 | 0.202 | -0.797 | -0.433 | 1.21 | 16.46 | 475 | -- | -- |
| 66.94 | 0.381 | 9.99 | -1.21 | 1.2 | 1.35 | 0.226 | -- | -0.395 | 1.2 | 16.2 | 478 | -- | -- |
| 66.6 | 0.38 | 10 | -1.37 | 1.2 | 1.34 | -- | -0.829 | -0.435 | 1.19 | 16.7 | 474 | -- | -- |
| 67.12 | 0.382 | 9.99 | -1.22 | 1.19 | 1.33 | -- | -- | -0.394 | 1.18 | 16.3 | 485 | -- | -- |
| 121.44 | 0.513 | 10 | -1.5 | -- | 1.73 | -- | -0.541 | -0.504 | -- | 16.71 | 907 | -- | -- |
| 90.82 | 0.447 | 9.95 | -0.894 | 1.19 | -- | 0.0333 | -- | -0.178 | 23.9 | -- | -- | -- | -- |
| 90.82 | 0.446 | 9.95 | -0.896 | 1.19 | -- | -- | -- | -0.178 | 23.9 | -- | -- | -- | -- |
| 121.41 | 0.513 | 9.99 | -1.37 | -- | 1.73 | -- | -- | -0.468 | -- | 16.6 | 907 | -- | -- |
| 101.34 | 0.469 | 9.94 | -- | 1.2 | 0.75 | -- | -- | -0.191 | 0.75 | 20 | 420 | -- | -- |
| 179.86 | 0.627 | 9.92 | -0.86 | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
| 111.96 | 0.495 | 9.93 | -- | 1.18 | -- | -- | -- | -0.0784 | 23.9 | -- | -- | -- | -- |
| 163.21 | 0.595 | 9.94 | -- | -- | 1.09 | -- | -- | -0.233 | -- | 21.3 | 913 | -- | -- |
| 199.35 | 0.659 | 9.9 | -- | -- | -- | -- | -- | -0.0669 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 13 | 65.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 38 | 65.47 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 58 | 65.85 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 60 | 65.86 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 79 | 66.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 119 | 66.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 130 | 66.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 180 | 67.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 186 | 67.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 214 | 67.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 235 | 67.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 244 | 67.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 247 | 67.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 339 | 67.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 357 | 67.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 419 | 68.08 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 561 | 68.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 587 | 68.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 667 | 68.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 681 | 68.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 686 | 68.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 725 | 68.90 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 783 | 68.99 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 798 | 69.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 809 | 69.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 818 | 69.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 884 | 69.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 928 | 69.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 949 | 69.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 958 | 69.32 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 959 | 69.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 960 | 69.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 993 | 69.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 16 |