BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0497100 Os10g0497100|AK108318
         (332 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0497100  Similar to 1-acyl-sn-glycerol-3-phosphate acyl...   654   0.0  

>Os10g0497100 Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1,
           chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl
           acyltransferase 1). Splice isoform 2
          Length = 332

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/332 (96%), Positives = 321/332 (96%)

Query: 1   MGTLLRPRPLAHAAGAGDATPSTAHAXXXXXXXXXXXECQPHRVRRRPGPQVAVATASWR 60
           MGTLLRPRPLAHAAGAGDATPSTAHA           ECQPHRVRRRPGPQVAVATASWR
Sbjct: 1   MGTLLRPRPLAHAAGAGDATPSTAHAVVVSGGRGRGVECQPHRVRRRPGPQVAVATASWR 60

Query: 61  RRRETVVRSDFAAGGAATMGDSPQALSDIDVVSRVRGVCFYAVTAVAAIFLFVAMVVVHP 120
           RRRETVVRSDFAAGGAATMGDSPQALSDIDVVSRVRGVCFYAVTAVAAIFLFVAMVVVHP
Sbjct: 61  RRRETVVRSDFAAGGAATMGDSPQALSDIDVVSRVRGVCFYAVTAVAAIFLFVAMVVVHP 120

Query: 121 LVLLFDRYRRRAQHYIAKIWATLTISMFYKLDVEGMENLPPNSSPAVYVANHQSFLDIYT 180
           LVLLFDRYRRRAQHYIAKIWATLTISMFYKLDVEGMENLPPNSSPAVYVANHQSFLDIYT
Sbjct: 121 LVLLFDRYRRRAQHYIAKIWATLTISMFYKLDVEGMENLPPNSSPAVYVANHQSFLDIYT 180

Query: 181 LLTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDSRSQLDCLKRCVDLVKKGASVF 240
           LLTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDSRSQLDCLKRCVDLVKKGASVF
Sbjct: 181 LLTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDSRSQLDCLKRCVDLVKKGASVF 240

Query: 241 FFPEGTRSKDGKLGAFKRGAFSVATKTGAPVIPITLLGTGKLMPSGMEGILNSGSVKLII 300
           FFPEGTRSKDGKLGAFKRGAFSVATKTGAPVIPITLLGTGKLMPSGMEGILNSGSVKLII
Sbjct: 241 FFPEGTRSKDGKLGAFKRGAFSVATKTGAPVIPITLLGTGKLMPSGMEGILNSGSVKLII 300

Query: 301 HHPIEGNDAEKLCSEARKVIADTLILNGYGVH 332
           HHPIEGNDAEKLCSEARKVIADTLILNGYGVH
Sbjct: 301 HHPIEGNDAEKLCSEARKVIADTLILNGYGVH 332



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,355,767
Number of extensions: 460111
Number of successful extensions: 1570
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 231
Effective length of database: 11,762,187
Effective search space: 2717065197
Effective search space used: 2717065197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)