BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0497100 Os10g0497100|AK108318
         (332 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30580.1  | chr4:14932515-14934489 REVERSE LENGTH=357          351   3e-97
AT3G05510.1  | chr3:1595576-1598074 FORWARD LENGTH=449             50   1e-06
AT1G80950.1  | chr1:30412653-30414935 REVERSE LENGTH=399           49   3e-06

>AT4G30580.1 | chr4:14932515-14934489 REVERSE LENGTH=357
          Length = 356

 Score =  351 bits (901), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/287 (58%), Positives = 224/287 (78%), Gaps = 9/287 (3%)

Query: 40  QPHRVRRRPGPQVAVATASWRRRRETVVRSDFAAGGAATMGDSPQALSDIDVVSRVRGVC 99
            P+R   +  P+      S +  R+  VR+D +  GAAT  DS     +I + SR+RG+ 
Sbjct: 79  DPYRFLDKKSPR------SSQLARDITVRADLS--GAAT-PDSSFPEPEIKLSSRLRGIF 129

Query: 100 FYAVTAVAAIFLFVAMVVVHPLVLLFDRYRRRAQHYIAKIWATLTISMFYKLDVEGMENL 159
           F  V  ++A FL V M++ HP VLLFD YRR+  H+IAK+WA+++I  FYK+++EG+ENL
Sbjct: 130 FCVVAGISATFLIVLMIIGHPFVLLFDPYRRKFHHFIAKLWASISIYPFYKINIEGLENL 189

Query: 160 PPNSSPAVYVANHQSFLDIYTLLTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDS 219
           P + +PAVYV+NHQSFLDIYTLL+LG+ FKFISKT IF+ PIIGWAM ++GV+PL+RMD 
Sbjct: 190 PSSDTPAVYVSNHQSFLDIYTLLSLGKSFKFISKTGIFVIPIIGWAMSMMGVVPLKRMDP 249

Query: 220 RSQLDCLKRCVDLVKKGASVFFFPEGTRSKDGKLGAFKRGAFSVATKTGAPVIPITLLGT 279
           RSQ+DCLKRC++L+KKGASVFFFPEGTRSKDG+LG+FK+GAF+VA KTG  V+PITL+GT
Sbjct: 250 RSQVDCLKRCMELLKKGASVFFFPEGTRSKDGRLGSFKKGAFTVAAKTGVAVVPITLMGT 309

Query: 280 GKLMPSGMEGILNSGSVKLIIHHPIEGNDAEKLCSEARKVIADTLIL 326
           GK+MP+G EGILN G+V++IIH PI G+ A+ LC+EAR  IA+++ L
Sbjct: 310 GKIMPTGSEGILNHGNVRVIIHKPIHGSKADVLCNEARSKIAESMDL 356



>AT3G05510.1 | chr3:1595576-1598074 FORWARD LENGTH=449
          Length = 448

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 40/191 (20%)

Query: 148 FYKLDVEGMENLP------PNSSPAVYVANHQSFLDI--------------------YTL 181
           F ++ V G+E L       P + P V V+NH + +D                     +TL
Sbjct: 111 FNRVQVYGLEKLHDALLNRPKNKPLVTVSNHVASVDDPFVIASLLPPKFLLDARNLRWTL 170

Query: 182 LTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDSRSQLDCLKRCVDLVKKGASVFF 241
               RCFK          P+       + V+P+ R +   Q   +   +  +  G  V  
Sbjct: 171 CATDRCFKN---------PVTSAFSRSVKVLPISRGEGIYQ-QGMDIAISKLNNGGWVHI 220

Query: 242 FPEGTRSKDG--KLGAFKR--GAFSVATKTGAPVIPITLLGTGKLMPSGMEGILNSGSVK 297
           FPEG+RS+DG   +G+ KR  G   +   T   V+P    G   +MP G        +V 
Sbjct: 221 FPEGSRSRDGGKTMGSAKRGIGRLILDADTLPMVVPFVHTGMQDIMPVGASVPRIGKTVT 280

Query: 298 LIIHHPIEGND 308
           +II  PI  ND
Sbjct: 281 VIIGDPIHFND 291



>AT1G80950.1 | chr1:30412653-30414935 REVERSE LENGTH=399
          Length = 398

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 32/193 (16%)

Query: 165 PAVYVANHQSFLDIYTLLTLGRCF-KFISKTSIFMFPIIGWAMYLLGVIPLRRMDSRSQL 223
           P   V+NH S+LDI  L  +   F  F++K S+   P++G     LG + ++R       
Sbjct: 187 PGAIVSNHVSYLDI--LYHMSASFPSFVAKRSVGKLPLVGLISKCLGCVYVQREAKSPDF 244

Query: 224 DCLKRCVDL-------VKKGASVFFFPEGTRSKDGKLGAFKRGAFSVATKTGAPVIPITL 276
             +   V+         K   ++  FPEGT +    L  FK GAF      G PV+P+ L
Sbjct: 245 KGVSGTVNERVREAHSNKSAPTIMLFPEGTTTNGDYLLTFKTGAF----LAGTPVLPVIL 300

Query: 277 ------LGTGKLMPSGMEGIL--------NSGSVKLIIHHPI--EGNDAEKLCSEARKVI 320
                         SG   IL        +   ++L +++P   E +D +   S  RK++
Sbjct: 301 KYPYERFSVAWDTISGARHILFLLCQVVNHLEVIRLPVYYPSQEEKDDPKLYASNVRKLM 360

Query: 321 AD--TLILNGYGV 331
           A    LIL+  G+
Sbjct: 361 ATEGNLILSELGL 373



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,819,222
Number of extensions: 266064
Number of successful extensions: 736
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,392,385
Effective search space: 1955425705
Effective search space used: 1955425705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)