Os10g0494200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : N-acetyl-gamma-glutamyl-phosphate reductase domain containing protein.
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Os10g0494200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : N-acetyl-gamma-glutamyl-phosphate reductase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 388.2 | 0.926 | 3.04 | -0.575 | 0.144 | 0.974 | -0.016 | -6.61 | -0.259 | 0.867 | 30 | 10 | -- | -- |
| 397.16 | 0.935 | 2.98 | -0.0485 | 0.112 | 0.402 | 0.344 | -- | -0.204 | 2.86 | 30 | 10 | -- | -- |
| 386.71 | 0.923 | 3.03 | -0.46 | 0.161 | 0.718 | -- | -4.64 | -0.284 | 0.814 | 30 | 10 | -- | -- |
| 394.89 | 0.932 | 2.99 | -0.0548 | 0.14 | 0.451 | -- | -- | -0.221 | 1.59 | 30 | 10 | -- | -- |
| 387.52 | 0.917 | 3.03 | -0.452 | -- | 0.658 | -- | -4.21 | -0.282 | -- | 29.71 | 8 | -- | -- |
| 401.85 | 0.94 | 2.99 | -0.0107 | 0.0425 | -- | -0.341 | -- | -0.224 | 18.1 | -- | -- | -- | -- |
| 402.06 | 0.939 | 2.99 | -0.00838 | 0.0522 | -- | -- | -- | -0.225 | 20.7 | -- | -- | -- | -- |
| 395.95 | 0.931 | 2.99 | -0.044 | -- | 0.394 | -- | -- | -0.219 | -- | 30.09 | 8 | -- | -- |
| 394.97 | 0.931 | 2.99 | -- | 0.138 | 0.447 | -- | -- | -0.215 | 1.56 | 30 | 10 | -- | -- |
| 402.22 | 0.937 | 2.99 | -0.00848 | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
| 402.07 | 0.938 | 2.99 | -- | 0.0523 | -- | -- | -- | -0.224 | 20.7 | -- | -- | -- | -- |
| 396 | 0.93 | 2.99 | -- | -- | 0.392 | -- | -- | -0.214 | -- | 30.09 | 8 | -- | -- |
| 402.22 | 0.936 | 2.99 | -- | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 372.24 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 374.41 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 1 |
| 29 | 375.42 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 30 | 375.77 | temperature | 30 | 10 | > th | dose independent | rect. | 13 | 4 |
| 34 | 376.88 | temperature | 30 | 10 | > th | dose independent | rect. | 14 | 1 |
| 37 | 377.52 | wind | 3 | 90 | < th | dose independent | rect. | 12 | 10 |
| 43 | 378.51 | wind | 5 | 90 | < th | dose dependent | rect. | 12 | 10 |
| 68 | 380.32 | wind | 1 | 90 | < th | dose independent | rect. | 13 | 1 |
| 72 | 380.75 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 77 | 381.64 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 82 | 381.64 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 96 | 381.87 | wind | 3 | 270 | < th | dose dependent | rect. | 11 | 3 |
| 108 | 382.27 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 113 | 382.44 | wind | 3 | 270 | < th | dose independent | rect. | 11 | 3 |
| 119 | 382.86 | wind | 5 | 10 | < th | dose independent | rect. | 12 | 5 |
| 174 | 384.02 | wind | 3 | 10 | > th | dose dependent | rect. | 3 | 4 |
| 182 | 384.53 | humidity | 90 | 30 | < th | dose independent | rect. | 16 | 14 |
| 218 | 385.18 | wind | 3 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 222 | 385.29 | humidity | 70 | 90 | < th | dose independent | rect. | 17 | 3 |
| 237 | 385.34 | temperature | 30 | 10 | > th | dose independent | sin | 17 | NA |
| 267 | 385.65 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 21 |
| 272 | 385.85 | humidity | 90 | 30 | < th | dose dependent | rect. | 17 | 13 |
| 273 | 385.88 | humidity | 90 | 30 | < th | dose dependent | rect. | 16 | 15 |
| 288 | 386.33 | temperature | 30 | 10 | < th | dose independent | sin | 16 | NA |
| 291 | 386.37 | humidity | 90 | 30 | < th | dose independent | sin | 13 | NA |
| 293 | 386.42 | radiation | 20 | 10 | > th | dose independent | rect. | 12 | 5 |
| 312 | 386.49 | humidity | 90 | 30 | < th | dose independent | rect. | 16 | 10 |
| 313 | 386.51 | wind | 1 | 30 | < th | dose dependent | rect. | 10 | 4 |
| 318 | 386.52 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 331 | 386.67 | wind | 3 | 10 | > th | dose independent | rect. | 3 | 4 |
| 334 | 386.70 | temperature | 30 | 10 | < th | dose independent | sin | 20 | NA |
| 362 | 387.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 365 | 387.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 11 |
| 371 | 387.09 | temperature | 30 | 30 | < th | dose independent | rect. | 23 | 13 |
| 373 | 387.10 | wind | 3 | 10 | > th | dose independent | rect. | 5 | 2 |
| 378 | 387.16 | radiation | 20 | 10 | > th | dose independent | rect. | 12 | 21 |
| 380 | 387.17 | humidity | 90 | 30 | < th | dose independent | rect. | 13 | 23 |
| 386 | 387.21 | humidity | 90 | 10 | < th | dose independent | rect. | 12 | 18 |
| 412 | 387.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 18 | 23 |
| 417 | 387.36 | wind | 1 | 30 | < th | dose independent | rect. | 17 | 1 |
| 428 | 387.36 | wind | 1 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 477 | 387.60 | humidity | 90 | 90 | < th | dose dependent | rect. | 16 | 9 |
| 481 | 387.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 5 |
| 581 | 387.95 | temperature | 30 | 10 | < th | dose independent | rect. | 4 | 23 |
| 638 | 388.10 | humidity | 90 | 10 | < th | dose independent | rect. | 20 | 10 |
| 639 | 388.10 | humidity | 70 | 90 | < th | dose dependent | rect. | 17 | 3 |
| 674 | 388.20 | temperature | 30 | 10 | > th | dose independent | no | NA | NA |
| 821 | 388.40 | radiation | 20 | 10 | > th | dose independent | rect. | 12 | 2 |
| 830 | 388.51 | temperature | 30 | 10 | < th | dose independent | no | NA | NA |
| 842 | 388.58 | temperature | 30 | 10 | < th | dose independent | rect. | 22 | 23 |
| 849 | 388.61 | humidity | 90 | 30 | < th | dose independent | rect. | 16 | 20 |
| 850 | 388.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 2 |
| 854 | 388.65 | wind | 5 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 887 | 388.80 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 895 | 388.83 | wind | 5 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 896 | 388.83 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 908 | 388.91 | humidity | 90 | 30 | < th | dose independent | rect. | 19 | 23 |
| 917 | 388.95 | humidity | 90 | 30 | < th | dose independent | rect. | 11 | 23 |
| 926 | 389.01 | humidity | 80 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 954 | 389.11 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 959 | 389.14 | humidity | 90 | 30 | < th | dose independent | rect. | 23 | 23 |
| 963 | 389.15 | wind | 5 | 10 | < th | dose independent | rect. | 12 | 16 |
| 968 | 389.17 | humidity | 80 | 90 | < th | dose dependent | rect. | 20 | 2 |
| 982 | 389.27 | wind | 5 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 985 | 389.30 | wind | 5 | 1440 | > th | dose independent | rect. | 16 | 18 |