BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0494200 Os10g0494200|Os10g0494200
         (450 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19940.1  | chr2:8613168-8615649 FORWARD LENGTH=402            466   e-131

>AT2G19940.1 | chr2:8613168-8615649 FORWARD LENGTH=402
          Length = 401

 Score =  466 bits (1198), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/409 (59%), Positives = 290/409 (70%), Gaps = 44/409 (10%)

Query: 48  LRVRASVSSPQKL--YSSKTTQVKSGEEVQIAVLGASGYTGAEIVRLLANHPQFHIKVMT 105
           L + + V+SP  +    S ++ VK  ++++I +LGASGYTGAEIVRLLANHP F + +MT
Sbjct: 31  LTLGSHVASPSSMSFRVSASSSVKPEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMT 90

Query: 106 ADRKASEQFGSVFPHLITQDLPNLVAIKDADFSNVDAVFCCLPHGTTQEIIKGLPKQLKI 165
           ADRKA +   SVFPHL  Q LP LV++KDADFS VDAVFCCLPHGTTQEIIK LP  LKI
Sbjct: 91  ADRKAGQSMESVFPHLRAQKLPTLVSVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKI 150

Query: 166 VDLSADFRLRDINEYAEWYGHAHRAPELQQEAVYGLTEVLRDEIRNARLVANPGCYPTSI 225
           VDLSADFRLR+I EY EWYG  H+A ELQ+E VYGLTE+LR++I+ ARLVANPGCYPT+I
Sbjct: 151 VDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTI 210

Query: 226 QLPLVPLIKAKLIKLSNIIIDAK---SGSIKWLQNVYLYLAICPP-SAFKLALLTHCNKT 281
           QLPLVPL+KA LIK  NIIIDAK   SG+ +  +   LY  I    S++ +    H    
Sbjct: 211 QLPLVPLLKANLIKHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHV--- 267

Query: 282 VLAPEIEQGLSEAAKSKVTISFTPNLICMKRGMQSTMFVEMAPGVTAGDLYQHLKSTYEG 341
              PEIEQGLS+ A+SKVT+SFTP+L+ M RGMQST++VEMAPGV   DL+Q LK++YE 
Sbjct: 268 ---PEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYED 324

Query: 342 EEFVKLLHGSTVPHTRHVVGSNYCFMNVFEDRIPGRAIIISVVCVFNHLYAHCQTSFFRL 401
           EEFVK+L    VP T +V GSNYC M+VF DRIPGRAIIISV                  
Sbjct: 325 EEFVKVLDEGVVPRTHNVRGSNYCHMSVFPDRIPGRAIIISV------------------ 366

Query: 402 KDAKFLFSCSSTPQIDNLVKGASGQAVQNLNLMMGLPENRGLQYQPLFP 450
                         IDNLVKGASGQA+QNLN+M+G PE  GL +QPLFP
Sbjct: 367 --------------IDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,414,157
Number of extensions: 381464
Number of successful extensions: 822
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 2
Length of query: 450
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 348
Effective length of database: 8,310,137
Effective search space: 2891927676
Effective search space used: 2891927676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)