Os10g0490900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NtPRp27.
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Os10g0490900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NtPRp27.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 300.53 | 0.815 | 6.94 | 1.36 | 0.52 | 0.129 | 0.758 | 8.32 | -0.243 | 20.2 | 999.2 | 11867 | -- | -- |
| 327.51 | 0.843 | 7.07 | 1.22 | 0.293 | 1.46 | 0.458 | -- | -0.219 | 21.1 | 998.9 | 12062 | -- | -- |
| 301.5 | 0.809 | 6.94 | 1.35 | 0.535 | 0.124 | -- | 8.36 | -0.24 | 19.6 | 999 | 11751 | -- | -- |
| 320.66 | 0.834 | 7.03 | 0.893 | 0.466 | 1.82 | -- | -- | -0.123 | 19.4 | 998.8 | 12065 | -- | -- |
| 316.73 | 0.829 | 6.93 | 1.33 | -- | 0.138 | -- | 8.28 | -0.249 | -- | 998.9 | 11850 | -- | -- |
| 398.27 | 0.936 | 7.09 | 1.28 | 0.538 | -- | 0.719 | -- | -0.34 | 20 | -- | -- | -- | -- |
| 399.55 | 0.936 | 7.09 | 1.27 | 0.548 | -- | -- | -- | -0.338 | 19.6 | -- | -- | -- | -- |
| 335.8 | 0.853 | 7.03 | 0.858 | -- | 1.82 | -- | -- | -0.163 | -- | 998.8 | 12246 | -- | -- |
| 338.75 | 0.857 | 7.06 | -- | 0.564 | 2 | -- | -- | -0.203 | 19.6 | 999 | 12351 | -- | -- |
| 415.63 | 0.953 | 7.07 | 1.26 | -- | -- | -- | -- | -0.346 | -- | -- | -- | -- | -- |
| 441.75 | 0.983 | 7.12 | -- | 0.537 | -- | -- | -- | -0.479 | 19.7 | -- | -- | -- | -- |
| 353.96 | 0.876 | 7.05 | -- | -- | 2.01 | -- | -- | -0.23 | -- | 998.9 | 12350 | -- | -- |
| 457.34 | 0.998 | 7.1 | -- | -- | -- | -- | -- | -0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 291.08 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 3 | 291.91 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 12 | 295.28 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 13 | 295.31 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 16 | 295.38 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 21 | 295.42 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 25 | 295.48 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 30 | 295.56 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 34 | 295.65 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 55 | 295.90 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 59 | 295.95 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 61 | 295.96 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 63 | 295.97 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 90 | 296.15 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 21 |
| 102 | 296.24 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 107 | 296.26 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 24 | 17 |
| 109 | 296.26 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 134 | 296.36 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 153 | 296.50 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 169 | 296.56 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 176 | 296.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 179 | 296.60 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 194 | 296.67 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 202 | 296.69 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 207 | 296.71 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 223 | 296.76 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 235 | 296.80 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 238 | 296.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 260 | 296.87 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 275 | 296.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 280 | 296.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 283 | 296.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 309 | 297.02 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 318 | 297.06 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 334 | 297.11 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 342 | 297.12 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 373 | 297.20 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 418 | 297.35 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 429 | 297.37 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 475 | 297.54 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 555 | 297.85 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 564 | 297.89 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 569 | 297.91 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 574 | 297.94 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 599 | 298.11 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 617 | 298.15 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 618 | 298.15 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 645 | 298.17 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 658 | 298.18 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 667 | 298.24 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 878 | 299.49 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |