BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0490900 Os10g0490900|Os10g0490900
         (179 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G15220.1  | chr2:6608689-6609366 FORWARD LENGTH=226            218   1e-57
AT2G15130.1  | chr2:6565154-6565831 FORWARD LENGTH=226            193   5e-50

>AT2G15220.1 | chr2:6608689-6609366 FORWARD LENGTH=226
          Length = 225

 Score =  218 bits (555), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 133/177 (75%), Gaps = 5/177 (2%)

Query: 2   LADASSFIWDTFEQPGDGGDRKPVDAVTLTVEDIDGVAFTSGDGIHLSARYVGGYSAAGD 61
           L  A+ F+W  F+Q  +  DRK V  +TL +E+ DGVA+ S + IH +  Y+ G S  GD
Sbjct: 53  LRSATDFVWRLFQQT-NPSDRKSVTKITLFMENGDGVAYNSANEIHFNVGYLAGVS--GD 109

Query: 62  VRAEVTGVLYHEATHVWQWDGRGGADGGLIEGIADFVRLRAGYAPPHWVQPGQGDRWDQG 121
           V+ E TGV+YHE  H WQW+G G A GGLIEGIAD+VRL+AGYAP HWV PG+GDRWDQG
Sbjct: 110 VKREFTGVVYHEVVHSWQWNGAGRAPGGLIEGIADYVRLKAGYAPSHWVGPGRGDRWDQG 169

Query: 122 YDVTARFLDYCDSPAVVQGFVAQLNGKMKDGYSDDFFVQISGKTIDQLWQDYKAKYG 178
           YDVTARFLDYC+   +  GFVA+LN KM++GYSD FFV + GK ++QLW++YKAKYG
Sbjct: 170 YDVTARFLDYCN--GLRNGFVAELNKKMRNGYSDGFFVDLLGKDVNQLWREYKAKYG 224



>AT2G15130.1 | chr2:6565154-6565831 FORWARD LENGTH=226
          Length = 225

 Score =  193 bits (490), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 125/177 (70%), Gaps = 5/177 (2%)

Query: 2   LADASSFIWDTFEQPGDGGDRKPVDAVTLTVEDIDGVAFTSGDGIHLSARYVGGYSAAGD 61
           L DA+ F W  F+Q  +  DRK V  +TL +E+ +G+A++S D IH +A  +      G 
Sbjct: 53  LRDATDFTWRLFQQT-NPSDRKDVTKITLFMENSNGIAYSSQDEIHYNAGSL--VDDKGY 109

Query: 62  VRAEVTGVLYHEATHVWQWDGRGGADGGLIEGIADFVRLRAGYAPPHWVQPGQGDRWDQG 121
           VR   TGV+YHE  H WQW+G G A GGLIEGIAD+VRL+AGY   HWV+PG GDRWDQG
Sbjct: 110 VRRGFTGVVYHEVVHSWQWNGAGRAPGGLIEGIADYVRLKAGYVASHWVRPGGGDRWDQG 169

Query: 122 YDVTARFLDYCDSPAVVQGFVAQLNGKMKDGYSDDFFVQISGKTIDQLWQDYKAKYG 178
           YDVTARFL+YC+   +  GFVA+LN KM+  Y+D FFV + GK ++QLW++YKA YG
Sbjct: 170 YDVTARFLEYCND--LRNGFVAELNKKMRSDYNDGFFVDLLGKDVNQLWREYKANYG 224



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.140    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,458,765
Number of extensions: 193035
Number of successful extensions: 384
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 87
Effective length of database: 8,584,297
Effective search space: 746833839
Effective search space used: 746833839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)