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Os10g0437600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Starch synthase II, chloroplast precursor (EC 2.4.1.21) (SS II) (GBSSII) (Granule-bound starch synthase II).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0226) R2 : 0.802
β1 : -1.42 (0.0828) R2dD : 0.132 R2D : 0.107
β2 : 2.32 (0.0583) R2dC : 0.693 R2C : 0.673
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.185 (0.0483) R2dN8 : 0.00859 R2N8 : -0.00947
σ : 0.425
deviance : 82.49
__
_____
C
peak time of C : 4.62
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.87 0.401 10.9 -1.63 2.33 0.545 0.317 -1.33 -0.34 4.9 -0.025 1229 -- --
75.37 0.404 10.9 -1.5 2.33 0.469 0.203 -- -0.31 4.79 11.46 1288 -- --
73.09 0.398 10.9 -1.63 2.34 0.547 -- -1.38 -0.339 4.9 -2.26 1210 -- --
75.4 0.404 10.9 -1.49 2.3 0.448 -- -- -0.294 4.75 12.01 1288 -- --
344.82 0.87 10.9 -1.34 -- -0.88 -- 0.345 -0.136 -- -2.26 1210 -- --
82.39 0.426 10.8 -1.41 2.32 -- 0.19 -- -0.184 4.63 -- -- -- --
82.49 0.425 10.8 -1.42 2.32 -- -- -- -0.185 4.62 -- -- -- --
187.4 0.638 10.8 -1.25 -- -2.31 -- -- 0.0553 -- -8.017 503 -- --
99.99 0.466 10.7 -- 2.33 1.02 -- -- 0.212 4.6 56.05 47520 -- --
370.04 0.899 10.9 -1.33 -- -- -- -- -0.125 -- -- -- -- --
135.31 0.544 10.8 -- 2.3 -- -- -- -0.0278 4.63 -- -- -- --
228.28 0.704 10.8 -- -- -2.34 -- -- 0.197 -- -14.08 516 -- --
416.46 0.953 10.8 -- -- -- -- -- 0.0226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.05 temperature 30.0 90 < th dose independent rect. 3 9
2 69.24 humidity 70.0 720 > th dose independent rect. 17 8
3 69.27 radiation 40.0 90 < th dose dependent rect. 12 15
4 69.35 humidity 70.0 720 > th dose independent rect. 19 14
5 69.40 precipitation 0.1 720 < th dose independent rect. 7 23
6 69.40 precipitation 0.1 720 < th dose dependent rect. 7 23
7 69.51 precipitation 0.1 720 < th dose independent rect. 16 14
8 69.51 precipitation 0.1 720 < th dose independent rect. 7 15
9 69.51 radiation 40.0 720 < th dose dependent rect. 15 2
10 69.51 precipitation 0.1 720 < th dose dependent rect. 16 14
11 69.51 precipitation 0.1 720 < th dose dependent rect. 7 15
13 69.56 radiation 30.0 720 < th dose independent rect. 13 4
17 69.63 radiation 40.0 90 < th dose independent rect. 12 15
21 69.69 radiation 30.0 720 < th dose independent rect. 13 12
22 69.71 radiation 40.0 720 < th dose dependent rect. 15 10
23 69.75 radiation 30.0 720 < th dose independent rect. 14 10
24 69.79 radiation 40.0 90 < th dose independent rect. 3 9
29 69.86 precipitation 0.1 720 < th dose independent rect. 18 10
30 69.86 precipitation 0.1 720 < th dose dependent rect. 18 10
33 69.91 radiation 20.0 720 < th dose independent rect. 15 2
37 69.97 temperature 30.0 720 < th dose independent rect. 17 10
38 69.97 temperature 10.0 270 > th dose dependent rect. 5 10
39 69.98 humidity 50.0 720 > th dose dependent rect. 16 8
40 69.99 precipitation 0.1 270 < th dose independent rect. 1 11
41 69.99 precipitation 0.1 270 < th dose dependent rect. 1 11
46 70.08 humidity 80.0 720 > th dose independent rect. 6 1
48 70.10 wind 3.0 30 < th dose dependent rect. 3 9
50 70.12 precipitation 0.1 720 < th dose independent rect. 10 9
52 70.12 precipitation 0.1 720 < th dose dependent rect. 10 9
55 70.16 radiation 20.0 90 < th dose independent rect. 12 15
61 70.21 temperature 25.0 270 < th dose independent rect. 1 10
72 70.28 wind 7.0 270 < th dose independent rect. 16 13
73 70.28 temperature 10.0 720 > th dose dependent rect. 6 1
79 70.34 radiation 40.0 90 < th dose independent rect. 3 14
85 70.37 humidity 50.0 10 > th dose independent rect. 6 12
87 70.37 temperature 10.0 270 > th dose dependent rect. 22 17
90 70.39 atmosphere 995.0 720 > th dose independent rect. 19 23
91 70.40 humidity 70.0 720 > th dose independent sin 11 NA
94 70.42 radiation 40.0 90 < th dose independent rect. 3 12
99 70.45 atmosphere 995.0 720 > th dose independent rect. 6 10
107 70.50 humidity 50.0 90 > th dose dependent rect. 12 15
117 70.55 precipitation 0.1 720 < th dose independent rect. 18 18
118 70.55 precipitation 0.1 720 < th dose dependent rect. 18 18
121 70.61 wind 1.0 720 > th dose independent rect. 18 1
122 70.61 temperature 10.0 270 > th dose independent rect. 1 11
123 70.61 atmosphere 995.0 270 > th dose independent rect. 1 11
124 70.61 atmosphere 1015.0 270 < th dose independent rect. 1 11
125 70.61 temperature 10.0 270 > th dose independent rect. 12 13
128 70.62 radiation 40.0 720 < th dose dependent rect. 13 5
136 70.65 precipitation 0.1 720 < th dose independent rect. 9 19
137 70.65 precipitation 0.1 720 < th dose dependent rect. 9 19
138 70.65 radiation 40.0 720 < th dose dependent rect. 20 20
140 70.67 precipitation 0.1 90 < th dose independent rect. 3 9
142 70.67 precipitation 0.1 90 < th dose dependent rect. 3 9
145 70.69 atmosphere 1000.0 90 > th dose independent rect. 19 8
151 70.72 radiation 40.0 720 < th dose independent rect. 20 20
160 70.75 precipitation 0.1 720 < th dose independent rect. 18 1
161 70.75 precipitation 0.1 720 < th dose dependent rect. 18 1
163 70.75 humidity 80.0 90 > th dose dependent rect. 12 15
164 70.76 humidity 70.0 720 > th dose independent rect. 17 3
167 70.78 temperature 30.0 720 < th dose independent rect. 17 2
170 70.78 wind 9.0 270 < th dose independent rect. 5 11
175 70.81 temperature 10.0 10 > th dose dependent rect. 24 18
182 70.84 precipitation 0.1 10 < th dose independent rect. 3 9
185 70.84 precipitation 0.1 10 < th dose dependent rect. 3 9
192 70.86 humidity 60.0 720 > th dose dependent rect. 19 5
196 70.87 radiation 40.0 270 < th dose independent rect. 1 10
197 70.87 humidity 50.0 270 > th dose independent rect. 5 11
199 70.88 humidity 80.0 720 > th dose independent rect. 20 19
200 70.88 temperature 10.0 720 > th dose dependent rect. 4 3
203 70.89 wind 7.0 10 < th dose independent rect. 18 12
207 70.90 wind 9.0 720 < th dose dependent rect. 6 1
210 70.91 radiation 20.0 720 < th dose independent rect. 6 1
216 70.93 wind 9.0 270 < th dose independent rect. 1 11
226 70.95 precipitation 0.1 10 < th dose independent rect. 18 12
227 70.95 atmosphere 995.0 270 > th dose independent rect. 12 13
231 70.95 precipitation 0.1 10 < th dose dependent rect. 18 12
238 70.97 temperature 10.0 270 > th dose independent rect. 5 11
239 70.97 atmosphere 1015.0 270 < th dose independent rect. 5 11
241 70.97 temperature 10.0 270 > th dose independent rect. 16 13
242 70.97 radiation 30.0 270 < th dose independent rect. 16 13
262 71.03 humidity 50.0 720 > th dose dependent rect. 19 13
264 71.04 radiation 40.0 720 < th dose independent rect. 4 10
269 71.05 wind 9.0 270 < th dose independent rect. 12 13
272 71.06 precipitation 0.1 270 < th dose independent rect. 5 11
276 71.06 precipitation 0.1 270 < th dose dependent rect. 5 11
280 71.07 temperature 10.0 30 > th dose dependent rect. 6 12
287 71.09 wind 1.0 270 > th dose independent rect. 15 13
298 71.12 precipitation 0.1 720 < th dose independent rect. 16 5
299 71.12 temperature 10.0 90 > th dose independent rect. 3 9
300 71.12 atmosphere 995.0 90 > th dose independent rect. 3 9
301 71.12 atmosphere 1015.0 90 < th dose independent rect. 3 9
309 71.12 precipitation 0.1 720 < th dose dependent rect. 16 5
320 71.14 wind 1.0 270 > th dose independent rect. 4 12
325 71.16 humidity 90.0 720 < th dose dependent rect. 18 5
339 71.20 humidity 60.0 10 > th dose independent rect. 18 12
341 71.20 radiation 20.0 720 < th dose independent rect. 21 19
348 71.21 atmosphere 995.0 720 > th dose independent rect. 4 14
350 71.21 temperature 10.0 720 > th dose dependent rect. 23 8
351 71.22 wind 7.0 720 < th dose independent rect. 18 10
365 71.24 radiation 40.0 720 < th dose dependent rect. 6 1
372 71.26 humidity 70.0 720 > th dose independent rect. 19 1
385 71.29 wind 7.0 720 < th dose independent rect. 18 1
390 71.30 humidity 50.0 90 > th dose dependent rect. 3 9
392 71.31 temperature 10.0 10 > th dose independent rect. 6 12
394 71.31 temperature 10.0 10 > th dose independent rect. 18 12
396 71.31 atmosphere 1015.0 10 < th dose independent rect. 6 12
397 71.31 radiation 20.0 10 < th dose independent rect. 18 12
426 71.34 precipitation 0.1 720 < th dose independent rect. 6 1
429 71.34 atmosphere 995.0 10 > th dose independent rect. 6 12
430 71.34 atmosphere 995.0 10 > th dose independent rect. 18 12
432 71.34 precipitation 0.1 720 < th dose dependent rect. 6 1
445 71.35 temperature 30.0 720 < th dose independent rect. 17 15
446 71.35 radiation 40.0 90 < th dose independent rect. 1 16
452 71.36 wind 9.0 30 < th dose independent rect. 6 12
461 71.37 humidity 50.0 270 > th dose independent rect. 1 10
462 71.37 atmosphere 1000.0 90 > th dose independent rect. 17 10
491 71.41 wind 7.0 720 < th dose independent rect. 6 1
493 71.41 temperature 10.0 720 > th dose independent rect. 6 1
494 71.41 temperature 30.0 720 < th dose independent rect. 6 1
495 71.41 humidity 50.0 720 > th dose independent rect. 6 1
497 71.41 atmosphere 995.0 720 > th dose independent rect. 6 1
498 71.41 atmosphere 1015.0 720 < th dose independent rect. 6 1
502 71.41 temperature 10.0 720 > th dose independent rect. 7 23
506 71.42 wind 1.0 10 > th dose independent rect. 6 12
515 71.42 precipitation 0.1 10 < th dose independent rect. 6 12
518 71.42 precipitation 0.1 10 < th dose dependent rect. 6 12
529 71.45 temperature 10.0 720 > th dose independent rect. 18 1
530 71.45 humidity 50.0 720 > th dose independent rect. 18 1
531 71.45 atmosphere 1015.0 720 < th dose independent rect. 18 1
532 71.45 radiation 20.0 720 < th dose independent rect. 18 1
535 71.45 wind 7.0 270 < th dose independent rect. 15 7
540 71.45 temperature 10.0 720 > th dose independent rect. 19 23
542 71.46 radiation 40.0 90 < th dose independent sin 6 NA
545 71.46 precipitation 0.1 270 < th dose independent rect. 24 23
546 71.46 temperature 10.0 720 > th dose dependent rect. 18 1
549 71.46 precipitation 0.1 270 < th dose dependent rect. 24 23
551 71.47 wind 9.0 90 < th dose independent rect. 3 9
569 71.50 temperature 30.0 720 < th dose independent sin 14 NA
571 71.50 radiation 20.0 720 < th dose independent rect. 22 9
573 71.50 radiation 40.0 720 < th dose independent rect. 3 13
577 71.51 atmosphere 995.0 720 > th dose independent rect. 12 6
595 71.54 atmosphere 995.0 720 > th dose independent rect. 6 18
610 71.56 humidity 50.0 90 > th dose dependent rect. 15 12
617 71.57 atmosphere 995.0 720 > th dose independent rect. 21 19
619 71.57 wind 9.0 90 < th dose dependent rect. 3 9
620 71.57 radiation 40.0 720 < th dose dependent rect. 3 13
638 71.60 temperature 20.0 720 > th dose independent rect. 6 1
647 71.61 atmosphere 1000.0 270 > th dose independent rect. 17 8
665 71.62 radiation 40.0 720 < th dose dependent rect. 4 11
669 71.63 wind 7.0 720 < th dose independent rect. 16 4
670 71.63 atmosphere 995.0 720 > th dose independent rect. 13 4
691 71.65 radiation 40.0 10 < th dose dependent rect. 18 12
707 71.67 humidity 80.0 10 > th dose dependent rect. 10 17
713 71.68 humidity 50.0 720 > th dose dependent rect. 6 1
720 71.69 wind 9.0 720 < th dose dependent rect. 18 1
721 71.69 temperature 30.0 720 < th dose dependent rect. 17 2
725 71.70 radiation 40.0 720 < th dose dependent rect. 18 1
742 71.72 radiation 20.0 30 < th dose dependent rect. 18 13
748 71.73 temperature 30.0 10 < th dose independent rect. 18 12
764 71.75 temperature 10.0 10 > th dose independent rect. 3 9
766 71.75 atmosphere 995.0 10 > th dose independent rect. 3 9
767 71.75 atmosphere 1015.0 10 < th dose independent rect. 3 9
771 71.75 temperature 10.0 10 > th dose independent rect. 12 15
772 71.75 temperature 10.0 270 > th dose dependent sin 5 NA
776 71.75 temperature 30.0 10 < th dose dependent rect. 17 11
778 71.75 humidity 50.0 720 > th dose dependent rect. 20 20
799 71.78 temperature 30.0 720 < th dose dependent rect. 16 4
810 71.79 radiation 40.0 720 < th dose independent rect. 19 14
813 71.79 wind 9.0 90 < th dose dependent rect. 17 6
846 71.83 radiation 40.0 720 < th dose independent sin 4 NA
863 71.84 precipitation 0.1 90 < th dose independent rect. 3 16
868 71.84 precipitation 0.1 90 < th dose dependent rect. 3 16
879 71.86 temperature 10.0 720 > th dose independent rect. 18 10
880 71.86 humidity 50.0 720 > th dose independent rect. 18 10
881 71.86 radiation 20.0 720 < th dose independent rect. 18 10
885 71.86 temperature 10.0 720 > th dose independent rect. 4 14
887 71.86 atmosphere 1015.0 720 < th dose independent rect. 4 14
904 71.87 atmosphere 995.0 720 > th dose independent rect. 14 10
914 71.88 wind 1.0 10 > th dose independent rect. 4 14
915 71.88 wind 9.0 720 < th dose independent rect. 7 15
925 71.89 wind 7.0 90 < th dose independent rect. 17 6
926 71.89 atmosphere 1000.0 90 > th dose independent rect. 21 6
939 71.90 wind 9.0 270 < th dose independent rect. 22 17
949 71.91 atmosphere 1000.0 10 > th dose independent rect. 21 7
1000 71.95 temperature 10.0 10 > th dose dependent rect. 18 6