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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0410300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.028) R2 : 0.0163
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.162 (0.059) R2dN8 : 0.0211 R2N8 : 0.0163
σ : 0.528
deviance : 127.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.56 0.516 3.17 0.978 0.0567 -2.1 0.394 19.9 0.199 16.6 30.6 77 -- --
123.76 0.522 3.25 0.281 0.0351 0.349 0.409 -- 0.206 16.2 30.6 77 -- --
120.71 0.512 3.18 0.88 0.0667 -2.18 -- 21.2 0.221 18.7 31.18 65 -- --
123.87 0.522 3.25 0.286 0.0633 0.563 -- -- 0.205 19.1 32.5 29 -- --
120.89 0.512 3.18 0.897 -- -2.22 -- 21.8 0.204 -- 31.17 62 -- --
124.63 0.523 3.25 0.297 0.0704 -- 0.482 -- 0.195 16.3 -- -- -- --
125.2 0.524 3.25 0.301 0.0831 -- -- -- 0.197 17.9 -- -- -- --
123.98 0.519 3.25 0.283 -- 0.615 -- -- 0.204 -- 32.5 14 -- --
125.95 0.523 3.26 -- 0.0543 0.571 -- -- 0.177 19 31.93 13 -- --
125.56 0.524 3.25 0.299 -- -- -- -- 0.196 -- -- -- -- --
127.59 0.528 3.26 -- 0.0786 -- -- -- 0.164 18.1 -- -- -- --
126.1 0.523 3.26 -- -- 0.579 -- -- 0.176 -- 31.82 13 -- --
127.91 0.528 3.26 -- -- -- -- -- 0.162 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.73 radiation 40.0 14400 < th dose dependent rect. 23 1
2 112.86 temperature 25.0 30 > th dose dependent rect. 22 1
7 112.93 wind 7.0 1440 < th dose independent rect. 23 1
8 112.95 temperature 25.0 30 > th dose independent rect. 22 1
10 112.97 temperature 10.0 1440 > th dose independent rect. 23 1
13 112.97 temperature 30.0 1440 < th dose independent rect. 23 1
17 112.97 humidity 50.0 1440 > th dose independent rect. 23 1
27 112.97 atmosphere 995.0 1440 > th dose independent rect. 23 1
28 112.97 radiation 1.0 1440 < th dose independent rect. 23 1
48 112.97 temperature 10.0 1440 > th dose independent rect. 24 23
51 112.97 radiation 1.0 1440 < th dose dependent rect. 23 1
57 113.00 humidity 90.0 30 < th dose independent rect. 22 1
59 113.10 humidity 90.0 30 < th dose dependent rect. 22 1
65 113.22 precipitation 0.1 30 < th dose independent rect. 22 1
66 113.22 precipitation 0.1 30 < th dose dependent rect. 22 1
67 113.23 atmosphere 1005.0 30 > th dose dependent rect. 22 1
68 113.25 atmosphere 1005.0 30 > th dose independent rect. 22 1
70 113.32 wind 3.0 30 < th dose independent rect. 22 1
75 113.33 temperature 10.0 30 > th dose independent rect. 22 1
77 113.33 temperature 30.0 30 < th dose independent rect. 22 1
78 113.33 humidity 50.0 30 > th dose independent rect. 22 1
81 113.33 atmosphere 995.0 30 > th dose independent rect. 22 1
82 113.33 atmosphere 1010.0 30 < th dose independent rect. 22 1
84 113.33 radiation 1.0 30 < th dose independent rect. 22 1
89 113.33 temperature 10.0 30 > th dose independent rect. 23 23
90 113.33 radiation 1.0 30 < th dose dependent rect. 22 1
95 113.34 wind 1.0 30 > th dose independent rect. 22 1
97 113.35 wind 1.0 30 > th dose dependent rect. 22 1
98 113.35 wind 9.0 30 < th dose dependent rect. 22 1
104 113.42 humidity 50.0 30 > th dose dependent rect. 22 1
105 113.43 atmosphere 1015.0 30 < th dose dependent rect. 22 1
111 113.96 temperature 30.0 30 < th dose dependent rect. 22 1
118 114.11 wind 9.0 30 < th dose independent rect. 23 23
167 115.83 atmosphere 995.0 30 > th dose independent rect. 23 23
178 116.77 precipitation 0.1 30 < th dose independent rect. 23 23
180 116.77 precipitation 0.1 30 < th dose dependent rect. 23 23
201 117.97 humidity 70.0 30 < th dose independent rect. 16 16
204 118.04 wind 9.0 1440 > th dose dependent rect. 12 1
205 118.06 humidity 80.0 10 < th dose dependent rect. 16 16
207 118.11 wind 9.0 1440 > th dose independent rect. 12 1
225 118.53 radiation 20.0 90 > th dose dependent rect. 16 15
226 118.56 humidity 80.0 90 < th dose independent rect. 1 6
228 118.56 humidity 50.0 30 > th dose independent rect. 23 23
229 118.56 temperature 10.0 30 > th dose dependent rect. 23 23
232 118.58 atmosphere 1000.0 720 > th dose independent rect. 3 8
263 118.83 wind 3.0 90 > th dose independent rect. 21 3
264 118.83 temperature 25.0 90 > th dose independent rect. 21 8
266 118.85 radiation 10.0 30 < th dose independent rect. 23 23
280 118.96 radiation 10.0 10 > th dose dependent rect. 7 1
294 118.98 precipitation 0.1 1440 < th dose independent rect. 23 1
295 118.98 precipitation 0.1 1440 < th dose dependent rect. 23 1
300 119.02 radiation 30.0 90 > th dose dependent rect. 7 1
322 119.06 atmosphere 1015.0 720 < th dose independent rect. 3 8
324 119.07 radiation 30.0 10 > th dose dependent rect. 7 1
356 119.08 temperature 15.0 720 > th dose independent rect. 3 8
357 119.08 humidity 70.0 90 < th dose dependent rect. 18 13
359 119.12 humidity 70.0 90 < th dose independent rect. 18 13
365 119.16 humidity 70.0 10 < th dose dependent rect. 18 14
368 119.18 radiation 30.0 90 > th dose independent rect. 7 1
386 119.21 atmosphere 1005.0 30 > th dose dependent rect. 7 1
404 119.22 radiation 30.0 10 > th dose independent rect. 7 1
455 119.25 wind 9.0 720 > th dose independent rect. 12 4
457 119.25 atmosphere 1000.0 270 < th dose dependent rect. 10 3
481 119.32 atmosphere 1000.0 270 < th dose dependent rect. 11 1
482 119.32 temperature 15.0 30 > th dose dependent rect. 22 5
505 119.37 humidity 70.0 10 < th dose independent rect. 18 14
510 119.38 atmosphere 1000.0 90 < th dose dependent rect. 10 5
515 119.40 humidity 80.0 90 < th dose dependent rect. 1 6
520 119.41 wind 9.0 720 > th dose dependent rect. 12 4
558 119.44 humidity 80.0 10 < th dose dependent rect. 7 1
564 119.45 temperature 20.0 720 > th dose dependent rect. 23 12
575 119.48 temperature 25.0 720 > th dose dependent rect. 2 6
576 119.48 radiation 20.0 30 < th dose dependent rect. 23 23
584 119.50 atmosphere 1000.0 30 > th dose independent rect. 3 19
595 119.52 temperature 15.0 720 > th dose independent rect. 11 16
626 119.57 humidity 70.0 10 < th dose independent rect. 7 1
748 119.58 wind 3.0 270 > th dose independent rect. 20 1
819 119.63 wind 9.0 720 < th dose independent rect. 3 8
823 119.64 radiation 10.0 90 < th dose independent rect. 17 16
899 119.72 atmosphere 1000.0 270 < th dose independent rect. 10 3
907 119.76 atmosphere 1000.0 10 < th dose dependent rect. 11 5
914 119.80 radiation 1.0 43200 > th dose independent rect. 4 3
915 119.80 radiation 1.0 43200 < th dose independent rect. 4 3
980 119.85 wind 3.0 43200 < th dose independent rect. 12 1
990 119.87 temperature 25.0 90 > th dose dependent rect. 21 8