BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0410300 Os10g0410300|Os10g0410300
(293 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591 83 1e-16
AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303 77 8e-15
AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592 65 4e-11
>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
Length = 590
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 46 NLITLCTHRRT-RINWTEEENLHLLSYWIHYSTDPVKGIDRKSEFYWKAVADVFNTSAP- 103
NL+ T RR R W+ E+ L+S W++ S DP+ + K+ +WK + FN SA
Sbjct: 258 NLVQNTTDRRKHRRKWSRAEDAILISAWLNTSKDPIVDNEHKACAFWKRIGAYFNNSASL 317
Query: 104 TNGHKRSVKQLKTHWGDVKRDITKFCGVYGRLKATWKSGQSDDMVMNSAHAIFEKENKDK 163
N KR K W + + KF G Y + SGQS+D V A+ ++ K
Sbjct: 318 ANLPKREPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQVYTNNYKSN 377
Query: 164 PFTLEYMWREVKDLPKWCRI 183
FTLE+ WRE++ KWC +
Sbjct: 378 -FTLEHAWRELRHSKKWCSL 396
>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
Length = 302
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 54 RRTRINWTEEENLHLLSYWIHYSTDPVKGIDRKSEFYWKAVADVFNTSAPTNG-HKRSVK 112
+R R W+ E+L L+S W++ S D V G ++K +W +A + S NG KR
Sbjct: 44 KRERRKWSAGEDLVLVSAWLNTSKDAVIGNEQKGYAFWSRIAAYYGASPKLNGVEKRETG 103
Query: 113 QLKTHWGDVKRDITKFCGVYGRLKATWKSGQSDDMVMNSAHAIFEKENKDKPFTLEYMWR 172
+K W + + KF G Y SGQ+DD V+ AH I+ E+ FTLE+ WR
Sbjct: 104 HIKQRWTKINEGVGKFVGSYEAATKQKSSGQNDDDVVALAHEIYNSEH--GKFTLEHAWR 161
Query: 173 EVKDLPKWCRIVQEDSGNKRTKEETISKEKRPD 205
++ KW TK +SK ++ D
Sbjct: 162 VLRFEQKWL-------SAPSTKATVMSKRRKSD 187
>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
Length = 591
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 40 THQGPLNLITLCTHRRTRIN-WTEEENLHLLSYWIHYSTD--PVKGIDRKSEFYWKAV-A 95
T GP NL+ T R+ R W+ +++ L+S W++ S D V ++++ +WK + A
Sbjct: 253 TSDGP-NLVQDTTDRKARRRKWSPPDDVILISAWLNTSKDRKVVVYDEQQAHTFWKRIGA 311
Query: 96 DVFNTSAPTNGHKRSVKQLKTHWGDVKRDITKFCGVYGRLKATWKSGQSDDMVMNSAHAI 155
V N+++ N KR + W + + KF G Y + SGQS+D V A+ +
Sbjct: 312 HVSNSASLANLPKREWNHCRQRWRKINDYVCKFVGCYDQALNQRASGQSEDDVFQVAYQL 371
Query: 156 FEKENKDKPFTLEYMWREVKDLPKWC 181
+ N F LE+ WRE++ KWC
Sbjct: 372 Y-YNNYMSNFKLEHAWRELRHNKKWC 396
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,469,508
Number of extensions: 265796
Number of successful extensions: 729
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 3
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)