FiT-DB / Search/ Help/ Sample detail

Os10g0400800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0172) R2 : 0.0113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0825 (0.0362) R2dN8 : 0.0146 R2N8 : 0.0113
σ : 0.324
deviance : 48.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.4 0.272 10.2 0.292 0.358 0.365 0.538 0.3 -0.0443 17.7 40.69 15 -- --
33.6 0.27 10.2 0.298 0.357 0.364 0.536 -- -0.0442 17.6 40.71 14 -- --
34.05 0.272 10.2 0.289 0.362 0.351 -- 0.322 -0.0424 17.5 41.16 14 -- --
34.29 0.273 10.2 0.298 0.361 0.355 -- -- -0.0417 17.5 41.18 14 -- --
40.81 0.298 10.2 0.28 -- 0.391 -- 0.288 -0.0501 -- 41.25 14 -- --
36.98 0.285 10.2 0.305 0.394 -- 0.432 -- -0.0419 16.6 -- -- -- --
37.47 0.287 10.2 0.308 0.396 -- -- -- -0.0397 16.5 -- -- -- --
41.01 0.298 10.2 0.285 -- 0.396 -- -- -0.0508 -- 41.16 14 -- --
36.63 0.282 10.2 -- 0.355 0.363 -- -- -0.075 17.6 41.32 14 -- --
45.84 0.316 10.2 0.293 -- -- -- -- -0.0501 -- -- -- -- --
39.97 0.296 10.2 -- 0.39 -- -- -- -0.074 16.5 -- -- -- --
43.13 0.306 10.2 -- -- 0.389 -- -- -0.0868 -- 40 14 -- --
48.09 0.324 10.2 -- -- -- -- -- -0.0825 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.26 temperature 10.0 270 > th dose dependent rect. 9 1
3 31.44 temperature 20.0 10 > th dose dependent rect. 3 6
4 31.44 temperature 20.0 10 > th dose dependent rect. 1 8
5 31.45 temperature 10.0 10 > th dose dependent rect. 9 6
7 31.50 temperature 25.0 10 > th dose independent rect. 1 8
17 31.59 radiation 1.0 270 > th dose dependent rect. 9 1
19 31.61 precipitation 0.1 270 < th dose independent rect. 10 23
20 31.61 precipitation 0.1 270 < th dose dependent rect. 10 23
29 31.79 temperature 15.0 10 > th dose dependent rect. 23 10
31 31.81 temperature 10.0 10 > th dose dependent rect. 15 18
36 31.86 temperature 15.0 10 > th dose independent rect. 15 18
39 31.87 humidity 90.0 10 < th dose independent rect. 3 6
42 31.88 precipitation 0.1 10 < th dose independent rect. 15 18
43 31.88 precipitation 0.1 10 < th dose dependent rect. 15 18
52 31.92 radiation 40.0 10 < th dose independent rect. 12 21
57 31.94 humidity 50.0 30 > th dose independent rect. 9 6
67 31.97 radiation 1.0 10 > th dose dependent rect. 9 6
68 31.98 wind 1.0 30 > th dose independent rect. 9 6
83 32.07 humidity 50.0 270 > th dose independent rect. 9 1
84 32.07 radiation 1.0 10 > th dose independent rect. 9 6
94 32.13 humidity 90.0 720 < th dose independent rect. 21 1
95 32.13 temperature 10.0 10 > th dose independent rect. 9 6
97 32.13 atmosphere 995.0 10 > th dose independent rect. 9 6
98 32.13 atmosphere 1015.0 10 < th dose independent rect. 9 6
99 32.13 precipitation 0.1 10 < th dose independent rect. 9 6
101 32.13 precipitation 0.1 10 < th dose dependent rect. 9 6
112 32.16 wind 1.0 270 > th dose independent rect. 9 1
113 32.16 radiation 20.0 270 > th dose independent rect. 9 1
114 32.16 precipitation 0.1 270 < th dose independent rect. 9 1
115 32.16 temperature 10.0 1440 > th dose independent rect. 10 6
118 32.16 wind 9.0 10 < th dose independent rect. 15 18
120 32.16 temperature 10.0 1440 > th dose independent rect. 16 18
123 32.16 precipitation 0.1 270 < th dose dependent rect. 9 1
124 32.17 temperature 10.0 270 > th dose independent rect. 9 1
125 32.17 atmosphere 995.0 270 > th dose independent rect. 9 1
126 32.17 atmosphere 1015.0 270 < th dose independent rect. 9 1
128 32.17 temperature 10.0 270 > th dose independent rect. 10 23
129 32.18 wind 9.0 270 < th dose independent rect. 9 1
138 32.20 wind 9.0 270 < th dose independent rect. 10 23
155 32.24 radiation 1.0 90 > th dose dependent rect. 8 6
164 32.26 radiation 40.0 10 < th dose independent rect. 4 16
167 32.28 radiation 40.0 10 < th dose independent rect. 15 18
171 32.31 wind 9.0 30 < th dose independent rect. 9 6
179 32.36 radiation 1.0 270 > th dose independent rect. 9 1
181 32.37 radiation 40.0 90 < th dose independent rect. 11 22
190 32.40 humidity 90.0 10 < th dose independent rect. 14 19
192 32.41 radiation 40.0 10 < th dose independent rect. 6 14
203 32.43 atmosphere 1015.0 270 < th dose dependent rect. 9 1
237 32.50 atmosphere 1015.0 30 < th dose dependent rect. 9 6
245 32.54 humidity 90.0 10 < th dose independent rect. 9 6
248 32.54 humidity 90.0 720 > th dose dependent rect. 20 5
254 32.56 atmosphere 995.0 10 > th dose independent rect. 15 18
263 32.59 humidity 90.0 720 < th dose independent rect. 20 4
271 32.60 humidity 90.0 720 > th dose dependent rect. 18 8
294 32.67 radiation 10.0 1440 > th dose independent rect. 12 1
302 32.68 atmosphere 1015.0 10 < th dose independent rect. 15 18
314 32.69 humidity 50.0 10 > th dose independent rect. 15 18
321 32.70 humidity 50.0 30 > th dose independent rect. 9 19
333 32.73 radiation 1.0 90 > th dose independent rect. 14 18
336 32.73 radiation 20.0 90 > th dose dependent sin 7 NA
349 32.76 wind 5.0 30 < th dose independent rect. 4 5
350 32.76 precipitation 0.1 10 < th dose independent rect. 4 5
356 32.76 atmosphere 995.0 30 > th dose independent rect. 9 19
359 32.76 precipitation 0.1 10 < th dose dependent rect. 4 5
368 32.77 humidity 90.0 720 > th dose dependent rect. 9 17
374 32.79 humidity 90.0 270 < th dose independent rect. 9 1
395 32.81 temperature 10.0 10 > th dose independent rect. 4 5
399 32.81 temperature 30.0 10 < th dose independent rect. 4 5
401 32.81 humidity 50.0 10 > th dose independent rect. 4 5
405 32.81 atmosphere 995.0 10 > th dose independent rect. 4 5
407 32.81 atmosphere 1015.0 10 < th dose independent rect. 4 5
409 32.81 radiation 30.0 90 < th dose independent rect. 3 6
410 32.81 temperature 10.0 10 > th dose independent rect. 9 19
426 32.83 radiation 1.0 90 > th dose independent rect. 17 15
429 32.83 radiation 40.0 10 < th dose independent rect. 23 23
450 32.84 humidity 90.0 720 > th dose dependent rect. 14 12
459 32.84 wind 9.0 10 < th dose dependent rect. 15 18
474 32.86 atmosphere 1000.0 10 > th dose dependent rect. 4 5
476 32.86 humidity 50.0 270 > th dose dependent rect. 17 10
477 32.86 atmosphere 1015.0 30 < th dose dependent rect. 15 18
479 32.87 radiation 20.0 270 > th dose independent rect. 8 3
508 32.89 wind 1.0 30 > th dose dependent rect. 9 5
517 32.90 radiation 1.0 10 > th dose dependent rect. 9 3
542 32.93 radiation 30.0 90 > th dose independent sin 7 NA
548 32.93 humidity 90.0 720 > th dose dependent sin 17 NA
577 32.94 atmosphere 995.0 1440 > th dose independent rect. 10 4
593 32.95 radiation 40.0 90 < th dose independent rect. 4 15
615 32.96 wind 9.0 30 < th dose independent rect. 9 19
626 32.96 radiation 10.0 1440 < th dose dependent rect. 9 7
627 32.96 radiation 1.0 90 > th dose dependent rect. 8 9
643 32.98 wind 1.0 30 > th dose independent rect. 4 5
650 32.98 temperature 10.0 270 > th dose dependent rect. 4 1
690 33.01 humidity 90.0 10 < th dose dependent rect. 15 18
698 33.02 atmosphere 1005.0 270 > th dose dependent rect. 4 1
717 33.03 radiation 30.0 90 < th dose independent sin 6 NA
732 33.03 humidity 50.0 720 > th dose dependent rect. 15 13
761 33.04 wind 9.0 10 < th dose dependent rect. 4 5
783 33.06 atmosphere 1005.0 10 > th dose independent rect. 4 5
841 33.08 wind 9.0 270 < th dose dependent rect. 9 1
864 33.10 radiation 40.0 10 < th dose independent rect. 10 23
886 33.11 radiation 40.0 10 > th dose independent sin 7 NA
905 33.12 wind 5.0 270 < th dose independent rect. 4 1
913 33.12 precipitation 0.1 30 < th dose independent rect. 9 19
921 33.12 precipitation 0.1 30 < th dose dependent rect. 9 19
923 33.13 radiation 1.0 1440 < th dose independent rect. 11 1
937 33.13 radiation 1.0 1440 < th dose dependent rect. 11 1
938 33.13 radiation 20.0 1440 < th dose dependent rect. 12 1
963 33.14 temperature 30.0 270 < th dose independent rect. 17 10
974 33.14 radiation 40.0 10 > th dose independent rect. 13 23
997 33.15 precipitation 0.1 270 < th dose independent rect. 4 1
999 33.15 atmosphere 1015.0 10 < th dose independent rect. 9 19