BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0400800 Os10g0400800|AK068126
(493 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0400800 Similar to Phenylalanyl-tRNA synthetase alpha ... 1020 0.0
>Os10g0400800 Similar to Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
Length = 493
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/493 (100%), Positives = 493/493 (100%)
Query: 1 MADVEACLLAHLNSGGEVPDSRSYASSLRVTHDELEAVIKSLSAFRIVDTTDITKETWVL 60
MADVEACLLAHLNSGGEVPDSRSYASSLRVTHDELEAVIKSLSAFRIVDTTDITKETWVL
Sbjct: 1 MADVEACLLAHLNSGGEVPDSRSYASSLRVTHDELEAVIKSLSAFRIVDTTDITKETWVL 60
Query: 61 TDEAKGYVAGGSPEAQLVAAIPPEGASKDVLREKLGSVFDIGMKTAAKNKWIGFEKGNKD 120
TDEAKGYVAGGSPEAQLVAAIPPEGASKDVLREKLGSVFDIGMKTAAKNKWIGFEKGNKD
Sbjct: 61 TDEAKGYVAGGSPEAQLVAAIPPEGASKDVLREKLGSVFDIGMKTAAKNKWIGFEKGNKD 120
Query: 121 LVLRKVNTIKDDLQEQLKSLESGEVLSDKVIDDLKRRKLITKEKSIWYALKKGPQFVAKR 180
LVLRKVNTIKDDLQEQLKSLESGEVLSDKVIDDLKRRKLITKEKSIWYALKKGPQFVAKR
Sbjct: 121 LVLRKVNTIKDDLQEQLKSLESGEVLSDKVIDDLKRRKLITKEKSIWYALKKGPQFVAKR 180
Query: 181 KKLATDVTQEHLRSGDWKDLEFKDYNFGAQGQPIAIGYVQPLLEVREEIQNIFLQMGFTE 240
KKLATDVTQEHLRSGDWKDLEFKDYNFGAQGQPIAIGYVQPLLEVREEIQNIFLQMGFTE
Sbjct: 181 KKLATDVTQEHLRSGDWKDLEFKDYNFGAQGQPIAIGYVQPLLEVREEIQNIFLQMGFTE 240
Query: 241 MPTNNYVESSFWNFDALFQPQQHPARDSHDTFFLEAPAATKQLPEDYLEKVKEVHQRGGY 300
MPTNNYVESSFWNFDALFQPQQHPARDSHDTFFLEAPAATKQLPEDYLEKVKEVHQRGGY
Sbjct: 241 MPTNNYVESSFWNFDALFQPQQHPARDSHDTFFLEAPAATKQLPEDYLEKVKEVHQRGGY 300
Query: 301 GSKGYGYDWKRDEAEKNLLRTHTTAVSTRMLYKLAQEKPFAPKRYYSIDRVFRNEAVDRT 360
GSKGYGYDWKRDEAEKNLLRTHTTAVSTRMLYKLAQEKPFAPKRYYSIDRVFRNEAVDRT
Sbjct: 301 GSKGYGYDWKRDEAEKNLLRTHTTAVSTRMLYKLAQEKPFAPKRYYSIDRVFRNEAVDRT 360
Query: 361 HLAEFHQIEGLICDYGLTLGDLIGVLEDFFSSLGMSKLRFKPAYNPYTEPSMEIFSYHEG 420
HLAEFHQIEGLICDYGLTLGDLIGVLEDFFSSLGMSKLRFKPAYNPYTEPSMEIFSYHEG
Sbjct: 361 HLAEFHQIEGLICDYGLTLGDLIGVLEDFFSSLGMSKLRFKPAYNPYTEPSMEIFSYHEG 420
Query: 421 LKKWVEVGNSGMFRPEMLLPMGLPEGVNVIAWGLSLERPTMILYGIDNIRDLFGPKVDFN 480
LKKWVEVGNSGMFRPEMLLPMGLPEGVNVIAWGLSLERPTMILYGIDNIRDLFGPKVDFN
Sbjct: 421 LKKWVEVGNSGMFRPEMLLPMGLPEGVNVIAWGLSLERPTMILYGIDNIRDLFGPKVDFN 480
Query: 481 LIKSNPLCRLGLQ 493
LIKSNPLCRLGLQ
Sbjct: 481 LIKSNPLCRLGLQ 493
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,279,080
Number of extensions: 738232
Number of successful extensions: 1625
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1625
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 388
Effective length of database: 11,553,331
Effective search space: 4482692428
Effective search space used: 4482692428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)