Os10g0400100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Methionyl-tRNA synthetase, dimer-forming family protein.
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Os10g0400100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Methionyl-tRNA synthetase, dimer-forming family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.03 | 0.596 | 6.22 | -0.231 | 0.483 | 2.28 | -0.477 | -0.907 | -0.248 | 0.339 | 15.2 | 218 | -- | -- |
| 161.58 | 0.592 | 6.21 | -0.0856 | 0.493 | 2.29 | -0.32 | -- | -0.213 | 0.273 | 14.99 | 211 | -- | -- |
| 161.84 | 0.597 | 6.22 | -0.0728 | 0.779 | 2.32 | -- | -0.216 | -0.226 | 23.1 | 15.2 | 218 | -- | -- |
| 161.85 | 0.593 | 6.21 | -0.048 | 0.6 | 2.3 | -- | -- | -0.201 | 23.7 | 14.9 | 128 | -- | -- |
| 168.31 | 0.604 | 6.19 | -0.0918 | -- | 2.23 | -- | -0.361 | -0.215 | -- | 14.97 | 448 | -- | -- |
| 217.37 | 0.691 | 6.14 | 0.43 | 0.606 | -- | 0.372 | -- | 0.121 | 19.1 | -- | -- | -- | -- |
| 217.71 | 0.691 | 6.14 | 0.422 | 0.606 | -- | -- | -- | 0.121 | 19.2 | -- | -- | -- | -- |
| 168.19 | 0.604 | 6.19 | -0.0479 | -- | 2.09 | -- | -- | -0.192 | -- | 14.9 | 457 | -- | -- |
| 161.92 | 0.593 | 6.21 | -- | 0.607 | 2.29 | -- | -- | -0.197 | 23.7 | 14.9 | 124 | -- | -- |
| 237.13 | 0.72 | 6.13 | 0.411 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 222.4 | 0.698 | 6.15 | -- | 0.602 | -- | -- | -- | 0.0744 | 19.3 | -- | -- | -- | -- |
| 168.25 | 0.604 | 6.19 | -- | -- | 2.08 | -- | -- | -0.184 | -- | 14.9 | 459 | -- | -- |
| 241.59 | 0.725 | 6.14 | -- | -- | -- | -- | -- | 0.0654 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.79 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 3 | 149.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 8 | 149.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 10 | 149.50 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 23 | 150.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 27 | 150.14 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 41 | 150.89 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 54 | 151.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 62 | 151.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 68 | 152.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 279 | 156.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 281 | 156.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 301 | 156.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 344 | 157.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 419 | 158.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 576 | 160.17 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 14 |
| 588 | 160.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 589 | 160.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 622 | 160.76 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 662 | 161.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 682 | 161.39 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 690 | 161.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 691 | 161.48 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 704 | 161.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 715 | 161.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 722 | 161.67 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 724 | 161.68 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 762 | 161.88 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 777 | 161.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 803 | 162.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 824 | 162.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 829 | 162.28 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 855 | 162.51 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 862 | 162.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 921 | 162.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 931 | 162.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |