BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0400100 Os10g0400100|AK067274
(605 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0400100 Methionyl-tRNA synthetase, dimer-forming famil... 1210 0.0
Os06g0508700 Similar to Scye1-prov protein 1017 0.0
Os03g0209600 Similar to MEtRS (EC 6.1.1.10) 165 1e-40
>Os10g0400100 Methionyl-tRNA synthetase, dimer-forming family protein
Length = 605
Score = 1210 bits (3131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/605 (97%), Positives = 592/605 (97%)
Query: 1 MAAAKEAVVPVEGRRNVLVTSALPYVNNVPHLGNIIGCVLSADAFARYCRLRGHNVLYVC 60
MAAAKEAVVPVEGRRNVLVTSALPYVNNVPHLGNIIGCVLSADAFARYCRLRGHNVLYVC
Sbjct: 1 MAAAKEAVVPVEGRRNVLVTSALPYVNNVPHLGNIIGCVLSADAFARYCRLRGHNVLYVC 60
Query: 61 GTDEYGTATETKAMEEGCSPREICDKYHAIHKEVYEWFDISFDIFGRTSSPQQTEVCQDI 120
GTDEYGTATETKAMEEGCSPREICDKYHAIHKEVYEWFDISFDIFGRTSSPQQTEVCQDI
Sbjct: 61 GTDEYGTATETKAMEEGCSPREICDKYHAIHKEVYEWFDISFDIFGRTSSPQQTEVCQDI 120
Query: 121 FLKLLDNNWLSENTMQQLYCNSCQRFLADRLVEGYCPTEGCNYDSARGDQCEKCGKLLNS 180
FLKLLDNNWLSENTMQQLYCNSCQRFLADRLVEGYCPTEGCNYDSARGDQCEKCGKLLNS
Sbjct: 121 FLKLLDNNWLSENTMQQLYCNSCQRFLADRLVEGYCPTEGCNYDSARGDQCEKCGKLLNS 180
Query: 181 TELVNPKCKVCGSTPCVRDTDHXXXXXXXXXXXXXKYIDETSLTGSWSQNAIHATNAWLK 240
TELVNPKCKVCGSTPCVRDTDH KYIDETSLTGSWSQNAIHATNAWLK
Sbjct: 181 TELVNPKCKVCGSTPCVRDTDHLFLELPLLREKLEKYIDETSLTGSWSQNAIHATNAWLK 240
Query: 241 EGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYISITACYTPEWEKWWKNPENVE 300
EGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYISITACYTPEWEKWWKNPENVE
Sbjct: 241 EGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYISITACYTPEWEKWWKNPENVE 300
Query: 301 LYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKTKGIGVFGNDA 360
LYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKTKGIGVFGNDA
Sbjct: 301 LYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKTKGIGVFGNDA 360
Query: 361 KSTNIPPEVWRYYLLTNRPEASDTLFTWTDLQAKCNNELLNNLGNFINRVLSFIAKPEGT 420
KSTNIPPEVWRYYLLTNRPEASDTLFTWTDLQAKCNNELLNNLGNFINRVLSFIAKPEGT
Sbjct: 361 KSTNIPPEVWRYYLLTNRPEASDTLFTWTDLQAKCNNELLNNLGNFINRVLSFIAKPEGT 420
Query: 421 GYGSVVPDSPDVDSHALTQSLAETVGKLIDQYIDAMDKVKIKQGLKIAMAISSEGNAYLQ 480
GYGSVVPDSPDVDSHALTQSLAETVGKLIDQYIDAMDKVKIKQGLKIAMAISSEGNAYLQ
Sbjct: 421 GYGSVVPDSPDVDSHALTQSLAETVGKLIDQYIDAMDKVKIKQGLKIAMAISSEGNAYLQ 480
Query: 481 ESQFWKLYKQDPASCATVMKTSVGIVYLLACLLEPFMPTFSKDVLQQLNLSPEEHLSFCD 540
ESQFWKLYKQDPASCATVMKTSVGIVYLLACLLEPFMPTFSKDVLQQLNLSPEEHLSFCD
Sbjct: 481 ESQFWKLYKQDPASCATVMKTSVGIVYLLACLLEPFMPTFSKDVLQQLNLSPEEHLSFCD 540
Query: 541 EKGEVEKAKRPWDLIPSGHRIGKPAPLFKGLENEAVKGLREKFAGSQAERKLRTQVAAQL 600
EKGEVEKAKRPWDLIPSGHRIGKPAPLFKGLENEAVKGLREKFAGSQAERKLRTQVAAQL
Sbjct: 541 EKGEVEKAKRPWDLIPSGHRIGKPAPLFKGLENEAVKGLREKFAGSQAERKLRTQVAAQL 600
Query: 601 EATSI 605
EATSI
Sbjct: 601 EATSI 605
>Os06g0508700 Similar to Scye1-prov protein
Length = 798
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/587 (78%), Positives = 521/587 (88%)
Query: 13 GRRNVLVTSALPYVNNVPHLGNIIGCVLSADAFARYCRLRGHNVLYVCGTDEYGTATETK 72
GRRN+LVTSALPYVNNVPHLGNIIGCVLSAD FARYCRLRG+NV+Y+CGTDEYGTATETK
Sbjct: 11 GRRNILVTSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNVIYICGTDEYGTATETK 70
Query: 73 AMEEGCSPREICDKYHAIHKEVYEWFDISFDIFGRTSSPQQTEVCQDIFLKLLDNNWLSE 132
AMEE CSP+EICDKYHA+H EVY+WFDI FD FGRTSSPQQTEVCQ IF KL++NNWL+E
Sbjct: 71 AMEEKCSPKEICDKYHAVHSEVYKWFDIKFDKFGRTSSPQQTEVCQAIFQKLMENNWLTE 130
Query: 133 NTMQQLYCNSCQRFLADRLVEGYCPTEGCNYDSARGDQCEKCGKLLNSTELVNPKCKVCG 192
NTMQQLYC++CQRFLADRLVEG CPTEGCNY++ARGDQCE C KLLN TEL++PKCKVC
Sbjct: 131 NTMQQLYCDTCQRFLADRLVEGKCPTEGCNYEAARGDQCENCSKLLNPTELIDPKCKVCK 190
Query: 193 STPCVRDTDHXXXXXXXXXXXXXKYIDETSLTGSWSQNAIHATNAWLKEGLKPRCITRDL 252
+TP VRDTDH YI+ETS+ G WSQNAI ATNAWLKEGLKPRCITRDL
Sbjct: 191 NTPRVRDTDHLFLELPLLSDKLVNYINETSVAGMWSQNAIQATNAWLKEGLKPRCITRDL 250
Query: 253 KWGVPVPHEKYKDKVFYVWFDAPIGYISITACYTPEWEKWWKNPENVELYQFMGKDNVPF 312
KWGVPVPHEKYKDKVFYVWFDAPIGY+SITA YTP+WEKWWK+P+NVEL+QFMGKDNVPF
Sbjct: 251 KWGVPVPHEKYKDKVFYVWFDAPIGYVSITASYTPDWEKWWKDPDNVELFQFMGKDNVPF 310
Query: 313 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKTKGIGVFGNDAKSTNIPPEVWRY 372
HTVMFPSTLLGTGE WT+MKTISVTEYLNYE+GKFSK+ GIGVFGNDAK TNIPPEVWRY
Sbjct: 311 HTVMFPSTLLGTGEKWTMMKTISVTEYLNYEAGKFSKSHGIGVFGNDAKDTNIPPEVWRY 370
Query: 373 YLLTNRPEASDTLFTWTDLQAKCNNELLNNLGNFINRVLSFIAKPEGTGYGSVVPDSPDV 432
YLLTNRPE SDTLFTW DLQAK N+ELLNNLGNFINRVLSF+AKP G GY S+VPD+P+
Sbjct: 371 YLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFVAKPAGAGYDSIVPDAPNA 430
Query: 433 DSHALTQSLAETVGKLIDQYIDAMDKVKIKQGLKIAMAISSEGNAYLQESQFWKLYKQDP 492
+SH LT++L E K ++QY++AM+KVK+KQGLK AM ISS+GNAYLQESQFWKLYK+DP
Sbjct: 431 ESHPLTKALVEKTNKWVEQYLEAMEKVKLKQGLKSAMGISSDGNAYLQESQFWKLYKEDP 490
Query: 493 ASCATVMKTSVGIVYLLACLLEPFMPTFSKDVLQQLNLSPEEHLSFCDEKGEVEKAKRPW 552
A+CA VMKTSVG+VYLLACLLEPFMP+FS +VL QLN++PEE LSFCD+KGE+ KAKRPW
Sbjct: 491 AACAVVMKTSVGVVYLLACLLEPFMPSFSNEVLLQLNMTPEESLSFCDDKGEIAKAKRPW 550
Query: 553 DLIPSGHRIGKPAPLFKGLENEAVKGLREKFAGSQAERKLRTQVAAQ 599
D + +GH+IGKP+PLFK L++E V+ R KFAGSQAER + Q A+
Sbjct: 551 DFVSAGHKIGKPSPLFKELKDEEVESFRNKFAGSQAERSSKAQADAE 597
>Os03g0209600 Similar to MEtRS (EC 6.1.1.10)
Length = 602
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/579 (24%), Positives = 242/579 (41%), Gaps = 89/579 (15%)
Query: 18 LVTSALPYVNNVPHLGNIIGCVLSADAFARYCRLRGHNVLYVCGTDEYGTATETKAMEEG 77
++T+ L YVN PH+G+ ++ADA AR+ RL V+++ GTDE+G T A G
Sbjct: 64 VLTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLDKRVVFITGTDEHGEKIATSAEACG 122
Query: 78 CSPREICDKYHAIHKEVYEWFDISFDIFGRTSSPQQTEVCQDIFLKLLDNNWLSENTMQQ 137
+P++ CD +K ++ DI +D F RT+ + V D + ++LD+ + +
Sbjct: 123 RNPKDHCDTISNSYKMLWADLDIEYDKFIRTTDRKHEAVVNDFYSRVLDSGDIYRADYEG 182
Query: 138 LYCNSCQRFLADRLVEGYCPTEGCNYDSARGDQCEKCGKLLNSTELVNPKCKVCGSTPCV 197
LYC SC+ + ++ EL KC PCV
Sbjct: 183 LYCVSCEEYKDEK-------------------------------ELGENKCCPVHLKPCV 211
Query: 198 RDTDHXXXXXXXXXXXXXKYIDETSLTGSWSQNAIHATNAWLKEGLKPRCITR-DLKWGV 256
+ + + + + ++ W+K GL+ I+R ++WG+
Sbjct: 212 PRKEDNYFFALSKYQHQLEDLLTKNPNFVRPSHRLNEVQGWVKSGLRDFSISRASVEWGI 271
Query: 257 PVPHEKYKDKVFYVWFDAPIGYISI------TACYTPEWEKWWKNPENVELYQFMGKDNV 310
PVP++ + YVWFDA +GYIS A E+ W P ++ L +GKD +
Sbjct: 272 PVPNDT--KQTIYVWFDALLGYISALLDDGEKASLQQAVERGW--PASLHL---IGKDIL 324
Query: 311 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKTKG--------IGVFGNDAKS 362
FH V +P+ L+ G ++ + +L + K K+ G + FG D+
Sbjct: 325 RFHAVYWPAMLMSAG--ISVPDAVFGHGFLTKDGMKMGKSLGNTLEPKDLVNRFGVDSV- 381
Query: 363 TNIPPEVWRYYLLTNRPEASDTLFTWTDLQAKCNNELLNNLGNFINRVLSFIAK--PEGT 420
RY+ L +D ++ N L N +GN +NR L + K
Sbjct: 382 --------RYFFLREVEFGNDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCKSTL 433
Query: 421 GYGSVVPDSPDVDSHALTQSLAETVGKLIDQYIDAMDKVKIKQGLKIAMAISSEGNAYLQ 480
+ S+ + A SL + V L+D+ D + + + + M I + GN Y+
Sbjct: 434 AFDSI--------AAADGISLKDNVENLVDKAKDQFENLLLSSACETLMEIGNLGNLYID 485
Query: 481 ESQFWKLYKQDPASCATVMKTSVGIV---YLLACLLEPFMPTFSKDVLQQLNLSPEEH-- 535
E W +KQ S K V I+ ++A L P P+ S + QL + ++
Sbjct: 486 EQAPWSCFKQGGESAEKAAKDLVIILETMRIIAIALSPITPSLSLRIYTQLGFTEDQFRT 545
Query: 536 LSFCDEKGEVEKAKRPWDLIPSGHRIGKPAPLFKGLENE 574
L + D K W + +G + +P P+F +E E
Sbjct: 546 LRWEDTK---------WGGLKAGQVMMEPKPVFARIETE 575
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,192,976
Number of extensions: 921319
Number of successful extensions: 1854
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1849
Number of HSP's successfully gapped: 4
Length of query: 605
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 498
Effective length of database: 11,448,903
Effective search space: 5701553694
Effective search space used: 5701553694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)