FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0334500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant disease resistance response protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0329) R2 : 0.00294
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0803 (0.0693) R2dN8 : 0.00379 R2N8 : 0.00294
σ : 0.62
deviance : 176.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.43 0.601 2.92 -0.0564 0.272 1.95 -0.329 3.61 0.0853 8.32 9.483 9 -- --
166.48 0.601 2.91 -0.0331 0.278 1.26 -0.29 -- 0.095 8.06 9.4 8 -- --
163.75 0.596 2.92 -0.0672 0.274 1.94 -- 3.54 0.0852 8.16 9.487 8 -- --
166.67 0.601 2.91 -0.0459 0.283 1.24 -- -- 0.0928 8.16 9.49 8 -- --
167.87 0.603 2.93 -0.0639 -- 1.99 -- 3.68 0.0887 -- 9.452 8 -- --
171.41 0.614 2.91 -0.0996 0.287 -- -0.235 -- 0.0666 8.93 -- -- -- --
171.6 0.613 2.91 -0.108 0.288 -- -- -- 0.0663 8.85 -- -- -- --
171.07 0.609 2.91 -0.0422 -- 1.26 -- -- 0.0967 -- 9.469 8 -- --
166.73 0.601 2.91 -- 0.283 1.25 -- -- 0.0984 8.16 9.475 8 -- --
176.32 0.62 2.92 -0.108 -- -- -- -- 0.0684 -- -- -- -- --
171.9 0.613 2.91 -- 0.288 -- -- -- 0.0783 8.88 -- -- -- --
171.12 0.609 2.91 -- -- 1.27 -- -- 0.102 -- 9.454 8 -- --
176.63 0.62 2.92 -- -- -- -- -- 0.0803 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.78 humidity 90.0 10 < th dose dependent rect. 4 3
4 162.05 radiation 1.0 30 > th dose dependent rect. 18 13
5 162.06 radiation 1.0 30 > th dose dependent rect. 5 2
17 162.58 humidity 90.0 30 < th dose independent rect. 4 3
21 163.18 atmosphere 1005.0 10 > th dose dependent rect. 5 2
22 163.19 wind 9.0 10 > th dose independent rect. 13 1
34 163.19 wind 9.0 10 > th dose dependent rect. 13 1
54 163.41 wind 5.0 30 > th dose dependent rect. 11 3
60 163.56 wind 5.0 90 > th dose independent rect. 10 1
61 163.56 wind 5.0 30 > th dose independent rect. 11 3
99 164.17 wind 5.0 720 > th dose independent rect. 4 2
100 164.17 wind 5.0 720 > th dose dependent rect. 4 2
130 164.55 wind 5.0 720 > th dose dependent rect. 2 5
134 164.66 humidity 60.0 10 > th dose independent rect. 11 20
136 164.67 wind 1.0 90 > th dose independent rect. 11 20
145 164.79 radiation 10.0 10 < th dose dependent rect. 6 1
155 164.85 precipitation 0.1 1440 < th dose independent rect. 15 1
157 164.85 precipitation 0.1 1440 < th dose dependent rect. 15 1
168 164.93 wind 1.0 10 > th dose independent rect. 11 20
171 164.95 wind 9.0 90 > th dose independent rect. 17 18
172 164.98 radiation 1.0 90 > th dose independent rect. 4 1
194 165.00 wind 9.0 10 > th dose independent rect. 11 7
195 165.02 wind 9.0 90 > th dose independent rect. 10 1
196 165.03 precipitation 0.1 1440 > th dose independent rect. 15 1
197 165.03 wind 9.0 90 > th dose independent rect. 22 13
198 165.03 precipitation 0.1 1440 > th dose dependent rect. 15 1
207 165.05 radiation 20.0 720 < th dose independent rect. 1 6
219 165.07 temperature 30.0 10 < th dose dependent rect. 6 1
222 165.08 humidity 90.0 1440 > th dose dependent rect. 15 1
242 165.19 wind 7.0 720 < th dose independent rect. 1 6
251 165.21 precipitation 0.1 720 < th dose independent rect. 19 18
254 165.21 precipitation 0.1 720 < th dose dependent rect. 19 18
280 165.29 precipitation 0.1 720 < th dose independent rect. 1 6
281 165.29 precipitation 0.1 720 < th dose dependent rect. 1 6
290 165.34 temperature 30.0 90 < th dose independent rect. 11 20
295 165.36 radiation 40.0 720 < th dose dependent rect. 1 6
296 165.36 wind 9.0 90 > th dose dependent rect. 22 13
443 165.61 wind 9.0 90 > th dose dependent rect. 17 18
455 165.66 wind 9.0 90 > th dose independent rect. 12 23
459 165.67 radiation 30.0 10 > th dose independent rect. 13 1
470 165.67 precipitation 0.1 720 < th dose independent rect. 9 22
472 165.67 wind 9.0 90 < th dose dependent rect. 7 12
474 165.67 precipitation 0.1 720 < th dose dependent rect. 9 22
475 165.68 humidity 70.0 720 > th dose independent rect. 1 6
491 165.73 atmosphere 1005.0 30 > th dose independent rect. 5 2
504 165.76 radiation 40.0 30 < th dose independent rect. 7 21
506 165.76 temperature 20.0 90 < th dose dependent rect. 4 1
509 165.76 wind 7.0 10 > th dose dependent rect. 18 21
512 165.77 atmosphere 995.0 270 > th dose dependent rect. 7 1
515 165.78 humidity 50.0 720 > th dose independent rect. 19 18
519 165.79 temperature 10.0 720 > th dose independent rect. 1 6
520 165.79 temperature 10.0 720 > th dose independent rect. 13 6
521 165.79 temperature 30.0 720 < th dose independent rect. 1 6
522 165.79 humidity 50.0 720 > th dose independent rect. 1 6
524 165.79 atmosphere 995.0 720 > th dose independent rect. 1 6
525 165.79 atmosphere 1015.0 720 < th dose independent rect. 13 6
527 165.79 precipitation 0.1 720 < th dose independent rect. 16 15
528 165.79 temperature 10.0 720 > th dose independent rect. 7 18
529 165.79 temperature 10.0 720 > th dose independent rect. 19 18
530 165.79 atmosphere 995.0 720 > th dose independent rect. 19 18
541 165.79 precipitation 0.1 720 < th dose dependent rect. 16 15
542 165.80 wind 9.0 10 < th dose independent rect. 7 13
548 165.81 wind 1.0 720 > th dose independent rect. 9 13
572 165.84 radiation 1.0 270 > th dose independent rect. 7 1
614 165.87 wind 7.0 90 > th dose dependent rect. 22 16
620 165.89 humidity 60.0 10 > th dose independent rect. 11 3
621 165.89 atmosphere 1000.0 30 > th dose independent rect. 11 20
622 165.89 wind 9.0 90 > th dose independent rect. 17 21
629 165.91 wind 9.0 10 > th dose independent sin 22 NA
646 165.94 precipitation 0.1 720 < th dose independent rect. 19 9
647 165.94 wind 1.0 90 > th dose independent rect. 19 12
648 165.94 precipitation 0.1 720 < th dose dependent rect. 19 9
653 165.95 wind 7.0 10 > th dose dependent sin 1 NA
666 165.97 wind 9.0 90 < th dose independent sin 3 NA
667 165.97 humidity 70.0 90 > th dose independent rect. 19 12
675 165.98 wind 7.0 10 > th dose dependent rect. 16 23
680 166.00 wind 1.0 10 > th dose independent rect. 6 1
683 166.00 wind 9.0 90 > th dose independent rect. 22 16
686 166.01 precipitation 0.1 90 < th dose independent rect. 19 12
693 166.01 precipitation 0.1 90 < th dose dependent rect. 19 12
696 166.02 wind 7.0 30 < th dose independent rect. 20 11
724 166.04 radiation 20.0 90 < th dose independent rect. 19 12
737 166.05 radiation 10.0 10 < th dose independent rect. 6 1
746 166.05 temperature 10.0 30 > th dose dependent rect. 7 4
777 166.08 wind 5.0 10 < th dose independent rect. 6 1
780 166.08 temperature 10.0 10 > th dose independent rect. 6 1
782 166.08 temperature 30.0 10 < th dose independent rect. 6 1
783 166.08 humidity 50.0 10 > th dose independent rect. 6 1
786 166.08 atmosphere 995.0 10 > th dose independent rect. 6 1
787 166.08 atmosphere 1015.0 10 < th dose independent rect. 6 1
791 166.08 precipitation 0.1 10 < th dose independent rect. 6 1
793 166.08 wind 1.0 720 > th dose independent rect. 10 11
796 166.08 temperature 10.0 10 > th dose independent rect. 7 23
797 166.08 precipitation 0.1 10 < th dose dependent rect. 6 1
803 166.09 wind 9.0 90 > th dose independent sin 8 NA
804 166.09 temperature 10.0 1440 > th dose independent rect. 21 11
807 166.09 temperature 30.0 1440 < th dose independent rect. 21 11
811 166.09 humidity 50.0 1440 > th dose independent rect. 21 11
816 166.09 atmosphere 1000.0 30 > th dose independent rect. 20 11
817 166.09 atmosphere 995.0 1440 > th dose independent rect. 21 11
819 166.09 temperature 10.0 1440 > th dose independent rect. 8 13
833 166.11 wind 9.0 90 > th dose independent sin 5 NA
837 166.11 temperature 10.0 30 > th dose independent rect. 20 11
838 166.11 temperature 30.0 30 < th dose independent rect. 20 11
839 166.11 humidity 50.0 30 > th dose independent rect. 20 11
847 166.11 temperature 10.0 30 > th dose independent rect. 7 13
849 166.11 atmosphere 1015.0 30 < th dose independent rect. 7 13
855 166.11 wind 7.0 90 > th dose dependent rect. 17 21
889 166.15 precipitation 0.1 720 < th dose independent rect. 13 6
891 166.15 precipitation 0.1 30 < th dose independent rect. 7 13
893 166.15 precipitation 0.1 720 < th dose dependent rect. 13 6
894 166.15 precipitation 0.1 30 < th dose dependent rect. 7 13
897 166.16 atmosphere 1000.0 270 > th dose independent rect. 8 23
902 166.17 atmosphere 1000.0 270 > th dose independent rect. 7 1
903 166.17 temperature 10.0 1440 > th dose independent rect. 8 4
906 166.17 atmosphere 995.0 1440 > th dose independent rect. 8 4
917 166.17 wind 9.0 90 < th dose independent rect. 7 12
919 166.17 temperature 10.0 1440 > th dose independent rect. 12 20
973 166.20 wind 9.0 10 > th dose independent rect. 17 21
975 166.20 precipitation 0.1 720 < th dose independent rect. 1 21
979 166.20 wind 9.0 10 < th dose dependent rect. 6 1
983 166.20 precipitation 0.1 720 < th dose dependent rect. 1 21