BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0334500 Os10g0334500|Os10g0334500
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64160.1 | chr1:23814063-23814611 FORWARD LENGTH=183 56 1e-08
AT1G65870.1 | chr1:24503624-24504193 FORWARD LENGTH=190 56 2e-08
AT5G49040.1 | chr5:19882676-19883251 REVERSE LENGTH=192 54 6e-08
AT4G23690.1 | chr4:12339152-12339715 REVERSE LENGTH=188 54 7e-08
AT5G42510.1 | chr5:16998268-16998816 REVERSE LENGTH=183 52 2e-07
AT2G21100.1 | chr2:9048687-9049336 REVERSE LENGTH=188 51 5e-07
AT5G42500.1 | chr5:16994359-16994916 REVERSE LENGTH=186 50 6e-07
AT4G38700.1 | chr4:18076583-18077155 REVERSE LENGTH=191 50 9e-07
AT1G22900.1 | chr1:8103910-8104491 REVERSE LENGTH=194 50 1e-06
AT3G13650.1 | chr3:4463056-4463616 FORWARD LENGTH=187 48 3e-06
AT4G11190.1 | chr4:6826682-6827236 FORWARD LENGTH=185 47 5e-06
AT3G13662.1 | chr3:4467090-4468470 FORWARD LENGTH=174 47 5e-06
>AT1G64160.1 | chr1:23814063-23814611 FORWARD LENGTH=183
Length = 182
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 74 FGTTLVDDWYLTATTNPNDNIVARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQV 133
FG ++ D +T N VAR QG + +++ N W+ ++ +VF + KG TL +
Sbjct: 71 FGKLVIFDDPMTIDKNFQSEPVARAQGFYFYDMKNDYNAWF-AYTLVFNSTQHKG-TLNI 128
Query: 134 MG--IIAASSGEWSVIGGTGEFSMAHGSIKFTTDPSSTSEDAVRELNIR 180
MG ++ S + SV+GGTG+F M+ G + F TD ++ +++I+
Sbjct: 129 MGADLMMVQSRDLSVVGGTGDFFMSRGIVTFETDTFEGAKYFRVKMDIK 177
>AT1G65870.1 | chr1:24503624-24504193 FORWARD LENGTH=190
Length = 189
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 44 MHLYLHQFVAG--------ANHPNRNEEFVIASSYPNGFGTTLVDDWYLTATTNPNDNIV 95
+H Y H V+G AN P N S GFG V D LT V
Sbjct: 47 LHFYFHDIVSGDKPTSVQVANGPTTN-------SSATGFGLVAVVDDKLTVGPEITSEEV 99
Query: 96 ARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQVMGI--IAASSGEWSVIGGTGEF 153
R QGM+ A Q+ + + N+VF +F ST+ + G + + E +IGGTG F
Sbjct: 100 GRAQGMYASADQNKLGLL-MAFNLVFTKGKFSDSTVAMYGRNPVLSKVREMPIIGGTGAF 158
Query: 154 SMAHG-SIKFTTDPSSTSEDAVRELNI 179
G ++ T + TS DAV E N+
Sbjct: 159 RFGRGYALAKTLVFNITSGDAVVEYNV 185
>AT5G49040.1 | chr5:19882676-19883251 REVERSE LENGTH=192
Length = 191
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 34 CGCPDQNEVT-MHLYLHQFVAGANHPN-RNEEFVIASSYPNGFGTTLVDDWYLTATTNPN 91
G + ++T + +Y H V G N + R + V S + FG+ + D LT N
Sbjct: 37 LGLGKKEKLTHLRVYWHDIVTGRNPSSIRIQGPVAKYSSSSYFGSITMIDNALTLDVPIN 96
Query: 92 DNIVARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQVMG--IIAASSGEWSVIGG 149
+V + QGM+V A Q + + N+ F+ ++ GST+ ++G + + E V+GG
Sbjct: 97 STVVGQAQGMYVGAAQKEIGLL-MAMNLAFKTGKYNGSTITILGRNTVMSKVREMPVVGG 155
Query: 150 TGEFSMAHGSIKFTTD 165
+G F A G ++ T
Sbjct: 156 SGMFRFARGYVEARTK 171
>AT4G23690.1 | chr4:12339152-12339715 REVERSE LENGTH=188
Length = 187
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 74 FGTTLVDDWYLTATTNPNDNIVARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQV 133
FG ++ D +T N VAR QG + + + N W+ S+ +VF KG TL +
Sbjct: 76 FGKFVIFDGPITMDKNYLSKPVARAQGFYFYDMKMDFNSWF-SYTLVFNSTEHKG-TLNI 133
Query: 134 MG--IIAASSGEWSVIGGTGEFSMAHGSIKFTTDPSSTSEDAVRELNIR 180
MG ++ + + SV+GGTG+F MA G F TD ++ +++I+
Sbjct: 134 MGADLMMEPTRDLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIK 182
>AT5G42510.1 | chr5:16998268-16998816 REVERSE LENGTH=183
Length = 182
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 20 SMAASTYYDICPVECGCPDQNEVTMHLYLHQFVAGANHPNRNEEFVIASSYPN-----GF 74
+++ + Y P + P++ +H Y H ++G ++ +A + P F
Sbjct: 19 AVSVTAYSTTTPYQGYKPEKF-THLHFYFHDVISG----DKPTAVKVAEARPTTTLNVKF 73
Query: 75 GTTLVDDWYLTATTNPNDNIVARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQVM 134
G ++ D LT +P+ V R QGM+ + ++ N VF F GST+ V
Sbjct: 74 GVIMIADDPLTEGPDPSSKEVGRAQGMYASTAMKDI-VFTMVFNYVFTAGEFNGSTIAVY 132
Query: 135 GI--IAASSGEWSVIGGTGEFSMAHG 158
G I + E +IGGTG F A G
Sbjct: 133 GRNDIFSKVRELPIIGGTGAFRFARG 158
>AT2G21100.1 | chr2:9048687-9049336 REVERSE LENGTH=188
Length = 187
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 39 QNEVT-MHLYLHQFVAGANHPN-RNEEFVIASSYPNGFGTTLVDDWYLTATTNPNDNIVA 96
+++VT + Y H ++G N + + P FG + D LT T +P +V
Sbjct: 39 KDKVTNLQFYFHDTLSGKNPTAVKVAQGTDTEKSPTLFGAVFMVDDALTETADPKSKLVG 98
Query: 97 RVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQVMGIIAASS--GEWSVIGGTGEFS 154
R QG++ + + + + + F+D +K ST+ ++G +A + E ++GGTG F
Sbjct: 99 RAQGLYGSSCKEEVGL-IMAMSFCFEDGPYKDSTISMIGKNSAMNPIREMPIVGGTGMFR 157
Query: 155 MAHG 158
MA G
Sbjct: 158 MARG 161
>AT5G42500.1 | chr5:16994359-16994916 REVERSE LENGTH=186
Length = 185
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 26 YYDICPVECGCPDQNEVTMHLYLHQFVAGANHPN--RNEEFVIASSYPNGFGTTLVDDWY 83
Y P + PD+ +H Y H ++G + P + E +S FG ++ D
Sbjct: 28 YSTTKPCQGYKPDKF-THLHFYFHDVISG-DKPTAVKVAEARRTNSSNVNFGVIMIADDP 85
Query: 84 LTATTNPNDNIVARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQVMGI--IAASS 141
LT +P+ V R QGM+ N + + N+ F F GST+ + G I +
Sbjct: 86 LTEGPDPSSKEVGRAQGMYALTAMKNIS-FTMVFNLAFTAGEFNGSTVAMYGRNEIFSKV 144
Query: 142 GEWSVIGGTGEFSMAHGSIKFTTDPSSTSEDAVRELNI 179
E +IGGTG F A G + T DAV E N+
Sbjct: 145 REMPIIGGTGAFRFARGYAQAKTY-KVVGLDAVVEYNV 181
>AT4G38700.1 | chr4:18076583-18077155 REVERSE LENGTH=191
Length = 190
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 6 SSALFILFLLPTFLSMAA-----STYYDICPVECGCPDQNEVT-MHLYLHQFVAGAN--- 56
S L I F L LSMA S Y + P + ++ +VT + YLH ++G N
Sbjct: 2 KSTLIIFFTLC--LSMAVMARHESYYGNTKPAKL---NEEKVTRVRFYLHDTLSGQNPTA 56
Query: 57 ----HPNRNEEFVIASSYPNGFGTTLVDDWYLTATTNPNDNIVARVQGMHVQAGQSNANM 112
H N S+ P GFG+ V D LT + + QGM+V + +
Sbjct: 57 VRIAHAN----LTGGSASPVGFGSLFVIDDPLTVGPEKHSKEIGNGQGMYVSGCKDLSKF 112
Query: 113 WYTSH-NIVFQDDRFKGSTLQVMGI--IAASSGEW--SVIGGTGEFSMAHGSIKFTTD 165
+ ++ F +F GS++ + +A GE +++GG G+F MA G +K T+
Sbjct: 113 TIVMYADLAFTAGKFNGSSISIFSRNPVAEEVGEREIAIVGGRGKFRMARGFVKVKTN 170
>AT1G22900.1 | chr1:8103910-8104491 REVERSE LENGTH=194
Length = 193
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 7/154 (4%)
Query: 9 LFILFLLPTFLSMAASTYYDICPVECGCPDQNEVTMHLYLHQFVAGANHPN--RNEEFVI 66
+F LL T + Y P + PD+ +H Y H ++G + P R E
Sbjct: 19 IFSTVLLLTITVTQSKPYSKTTPFQGNKPDK-LTHLHFYFHDIISG-DKPTTIRVAEAPG 76
Query: 67 ASSYPNGFGTTLVDDWYLTATTNPNDNIVARVQGMHVQAGQSNANMWYTSHNIVFQDDRF 126
+S FG L+ D +T + V R QG++ + N VF + F
Sbjct: 77 TNSSATVFGAVLIVDAPVTEGPELSSKEVGRAQGLYASTDMKTFG-FTMVFNFVFTEGEF 135
Query: 127 KGSTLQVMGI--IAASSGEWSVIGGTGEFSMAHG 158
GST + G I E +IGGTG+F A G
Sbjct: 136 NGSTAALYGRNPILLEERELPIIGGTGDFRFARG 169
>AT3G13650.1 | chr3:4463056-4463616 FORWARD LENGTH=187
Length = 186
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 35 GCPDQNEVTMHLYLHQFVAGANH-------PNRNEEFVIASSYPNGFGTTLVDDWYLTAT 87
G + +Y H ++G+N P N F FG+ V D LT
Sbjct: 37 GLRKEKLTHFRVYWHDILSGSNPSSVVINPPISNSSF---------FGSVTVIDNRLTTE 87
Query: 88 TNPNDNIVARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQVMG--IIAASSGEWS 145
N +V + QG++ GQ +A+ N F+ ++ GS++ ++G + E
Sbjct: 88 VAVNSTLVGQAQGIYAATGQRDASALMV-MNFAFKTGKYNGSSIAILGRNAVLTKVREMP 146
Query: 146 VIGGTGEFSMAHGSIKFTT 164
VIGG+G F A G ++ T
Sbjct: 147 VIGGSGLFRFARGYVEART 165
>AT4G11190.1 | chr4:6826682-6827236 FORWARD LENGTH=185
Length = 184
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 74 FGTTLVDDWYLTATTNPNDNIVARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQV 133
FG ++ D +T N VARVQG G++ + W S ++VF + KG+ L +
Sbjct: 72 FGKFVIMDNPVTMDQNMLSEQVARVQGFFFYHGKTKYDTW-LSWSVVFNSTQHKGA-LNI 129
Query: 134 MG--IIAASSGEWSVIGGTGEFSMAHGSIKFTTDPSSTSEDAVRELNIR 180
MG + + V+GGTG+F M G F TD S+ +++I+
Sbjct: 130 MGENAFMEPTRDLPVVGGTGDFVMTRGIATFMTDLVEGSKYFRVKMDIK 178
>AT3G13662.1 | chr3:4467090-4468470 FORWARD LENGTH=174
Length = 173
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 37 PDQNEVTMHL--YLHQFVAGANHPNRNEEFVIASSYPNGFGTTLVDDWYLTATTNPNDNI 94
P + E HL Y H V G N + + + +S +G T++DD LT N +
Sbjct: 36 PYKKEKLTHLRVYWHNSVNGRNPSSVMIQQPVLNSSLSG-SITMMDDP-LTFDVPRNATV 93
Query: 95 VARVQGMHVQAGQSNANMWYTSHNIVFQDDRFKGSTLQVMG--IIAASSGEWSVIGGTGE 152
V + QGM+V A Q + N F ++ GST+ ++G ++ + E V+GG+G
Sbjct: 94 VGQAQGMYVAAAQGEIG-FLMVMNFAFTTGKYNGSTITILGRNVVMSKVREMPVVGGSGI 152
Query: 153 FSMAHGSIKFTTD 165
F A G ++ T
Sbjct: 153 FRFARGYVEARTK 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,378,378
Number of extensions: 177655
Number of successful extensions: 416
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 14
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)