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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0205700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.41 (0.0696) R2 : 0.726
β1 : -0.856 (0.255) R2dD : 0.00677 R2D : 0.00194
β2 : 6.34 (0.194) R2dC : 0.737 R2C : 0.387
β3 : -4.39 (0.209) R2dE : 0.301 R2E : -0.0268
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.946 (0.149) R2dN8 : 0.0325 R2N8 : 0.00994
σ : 1.3
deviance : 780.7
__
_____
C
peak time of C : 5.98
E
wheather : temperature
threshold : -1.141
memory length : 211
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.2
open length of G : 5.82

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
770.22 1.3 5.4 -0.768 6.39 -4.44 -1.06 2.39 -0.926 5.99 -0.2354 216 21.2 5.85
780.43 1.3 5.41 -0.829 6.31 -4.36 -0.373 -- -0.936 6 -0.07416 210 21.2 5.83
771.95 1.29 5.4 -0.779 6.34 -4.48 -- 2.24 -0.911 5.95 0.2597 211 21.2 5.83
780.7 1.3 5.41 -0.856 6.34 -4.39 -- -- -0.946 5.98 -1.141 211 21.2 5.82
2253.45 2.22 5.52 -0.925 -- -2.75 -- 1.45 -0.816 -- -22.95 3 21.1 6.12
1033.43 1.51 5.38 -0.875 5.65 -- -1.8 -- -0.888 7.96 -- -- -- --
1042.98 1.51 5.38 -0.925 5.65 -- -- -- -0.887 7.95 -- -- -- --
1117.16 1.56 5.35 -0.514 -- -4.44 -- -- -0.339 -- -46.95 3 14 13.8
798.98 1.32 5.39 -- 6.35 -4.48 -- -- -0.839 5.96 0.4051 212 21.2 5.85
2783.37 2.47 5.52 -0.866 -- -- -- -- -0.813 -- -- -- -- --
1065.51 1.53 5.36 -- 5.64 -- -- -- -0.784 7.96 -- -- -- --
1129.04 1.56 5.43 -- -- -4.42 -- -- -0.422 -- -45.94 3 14 13.8
2803.15 2.47 5.5 -- -- -- -- -- -0.717 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 783.55 wind 9.0 270 < th dose independent rect. 3 17
2 785.93 temperature 10.0 270 > th dose dependent rect. 21 5
3 787.61 wind 9.0 270 < th dose independent rect. 16 15
4 788.12 radiation 20.0 270 < th dose independent rect. 16 15
5 789.06 precipitation 0.1 270 < th dose independent rect. 3 17
6 789.06 precipitation 0.1 270 < th dose dependent rect. 3 17
7 789.55 temperature 10.0 270 > th dose independent rect. 20 7
8 789.55 temperature 30.0 270 < th dose independent rect. 20 7
9 789.55 humidity 50.0 270 > th dose independent rect. 20 7
12 789.55 atmosphere 995.0 270 > th dose independent rect. 20 7
13 789.55 radiation 1.0 270 < th dose independent rect. 20 7
18 789.55 temperature 10.0 270 > th dose independent rect. 3 17
19 789.55 atmosphere 1015.0 270 < th dose independent rect. 3 17
20 789.55 radiation 1.0 270 < th dose dependent rect. 20 7
28 790.24 wind 9.0 270 < th dose independent rect. 20 7
29 791.39 temperature 10.0 270 > th dose independent rect. 7 9
30 791.39 atmosphere 1015.0 270 < th dose independent rect. 7 9
31 791.39 temperature 10.0 270 > th dose independent rect. 16 15
32 791.39 radiation 40.0 270 < th dose independent rect. 16 15
33 791.84 precipitation 0.1 270 < th dose independent rect. 16 15
34 791.84 precipitation 0.1 270 < th dose dependent rect. 16 15
35 791.94 temperature 10.0 270 > th dose dependent rect. 22 3
38 792.39 precipitation 0.1 270 < th dose independent rect. 20 7
39 792.39 precipitation 0.1 270 < th dose dependent rect. 20 7
41 793.49 precipitation 0.1 270 < th dose independent rect. 7 9
42 793.49 precipitation 0.1 270 < th dose dependent rect. 7 9
73 799.32 wind 9.0 270 < th dose independent rect. 7 9
93 800.34 atmosphere 995.0 270 > th dose independent rect. 3 17
94 800.51 atmosphere 995.0 270 > th dose independent rect. 16 15
95 800.98 humidity 60.0 270 > th dose independent rect. 2 7
99 801.86 precipitation 0.1 270 < th dose independent rect. 2 7
100 801.86 precipitation 0.1 270 < th dose dependent rect. 2 7
101 802.43 temperature 10.0 270 > th dose dependent rect. 23 1
104 803.45 radiation 40.0 270 < th dose dependent rect. 16 15
105 804.37 humidity 50.0 270 > th dose independent rect. 16 15
106 804.88 wind 9.0 270 < th dose independent rect. 1 21
108 805.58 humidity 50.0 270 > th dose independent rect. 3 17
110 806.03 radiation 40.0 270 < th dose independent rect. 2 7
111 806.57 temperature 15.0 270 > th dose independent rect. 22 3
112 806.89 wind 9.0 270 < th dose independent rect. 2 7
113 806.89 temperature 10.0 270 > th dose independent rect. 2 7
116 806.89 atmosphere 995.0 270 > th dose independent rect. 2 7
117 806.89 atmosphere 1015.0 270 < th dose independent rect. 2 7
118 806.89 temperature 10.0 270 > th dose independent rect. 9 17
121 807.73 atmosphere 995.0 270 > th dose independent rect. 7 9
130 809.64 temperature 30.0 270 < th dose independent rect. 22 3
131 809.64 humidity 50.0 270 > th dose independent rect. 22 3
134 809.64 atmosphere 995.0 270 > th dose independent rect. 22 3
135 809.64 radiation 1.0 270 < th dose independent rect. 22 3
140 809.64 temperature 10.0 270 > th dose independent rect. 1 21
141 809.64 radiation 1.0 270 < th dose dependent rect. 22 3
146 809.70 wind 9.0 270 < th dose independent rect. 22 3
149 810.23 precipitation 0.1 270 < th dose independent rect. 1 21
150 810.23 precipitation 0.1 270 < th dose dependent rect. 1 21
153 810.83 precipitation 0.1 270 < th dose independent rect. 22 3
154 810.83 precipitation 0.1 270 < th dose dependent rect. 22 3
159 811.32 temperature 30.0 270 < th dose independent rect. 2 7
164 812.19 wind 1.0 270 > th dose independent rect. 21 5
174 813.58 atmosphere 1015.0 270 < th dose independent rect. 1 21
187 815.00 wind 9.0 270 < th dose independent rect. 9 17
207 815.92 precipitation 0.1 270 < th dose independent rect. 9 17
208 815.92 precipitation 0.1 270 < th dose dependent rect. 9 17
212 815.97 temperature 10.0 90 > th dose independent rect. 11 16
218 816.49 wind 1.0 270 > th dose independent rect. 7 9
271 819.54 wind 1.0 270 > th dose independent rect. 22 3
285 820.32 humidity 50.0 270 > th dose independent rect. 2 19
327 822.14 radiation 1.0 10 < th dose dependent rect. 23 17
331 822.40 temperature 15.0 270 > th dose independent rect. 23 1
357 823.80 wind 9.0 270 < th dose independent rect. 13 9
383 824.80 wind 9.0 90 < th dose independent rect. 11 16
393 825.31 temperature 10.0 270 > th dose dependent rect. 2 6
396 825.45 temperature 10.0 270 > th dose independent rect. 13 9
397 825.45 temperature 10.0 270 > th dose independent rect. 22 15
398 825.45 atmosphere 995.0 270 > th dose independent rect. 22 15
415 826.39 humidity 50.0 270 > th dose dependent rect. 2 7
417 826.60 radiation 1.0 10 < th dose dependent rect. 23 15
419 826.66 wind 9.0 270 < th dose dependent rect. 2 6
426 827.11 wind 9.0 270 < th dose dependent rect. 3 4
428 827.23 radiation 1.0 10 < th dose dependent rect. 23 8
445 827.46 atmosphere 995.0 270 > th dose independent rect. 1 21
496 828.27 atmosphere 995.0 270 > th dose dependent rect. 21 6
499 828.42 atmosphere 1015.0 270 < th dose independent rect. 13 9
500 828.56 humidity 50.0 90 > th dose dependent rect. 23 4
508 828.91 wind 9.0 270 < th dose independent rect. 22 15
514 829.11 atmosphere 995.0 270 > th dose dependent rect. 22 4
519 829.55 wind 9.0 270 < th dose dependent rect. 22 3
571 830.44 wind 1.0 270 > th dose independent rect. 9 17
582 831.51 atmosphere 1015.0 270 < th dose independent rect. 16 15
642 833.31 radiation 40.0 270 < th dose independent rect. 13 8
662 833.47 wind 9.0 270 < th dose dependent rect. 21 5
667 833.59 wind 1.0 270 > th dose independent rect. 23 1
673 834.03 radiation 1.0 10 < th dose independent rect. 23 17
696 834.93 precipitation 0.1 270 < th dose independent rect. 13 9
697 834.93 precipitation 0.1 270 < th dose dependent rect. 13 9
714 835.68 radiation 1.0 10 < th dose independent rect. 23 7
737 836.54 wind 9.0 270 < th dose independent rect. 14 7
748 836.86 atmosphere 1015.0 270 < th dose independent rect. 14 7
749 836.98 atmosphere 1015.0 270 < th dose dependent rect. 3 4
750 837.01 precipitation 0.1 270 < th dose independent rect. 22 15
751 837.01 precipitation 0.1 270 < th dose dependent rect. 22 15
806 837.70 radiation 1.0 270 > th dose independent rect. 7 9
807 837.71 radiation 40.0 270 < th dose dependent rect. 3 4
809 838.02 radiation 1.0 10 < th dose independent rect. 23 15
814 838.14 humidity 50.0 270 > th dose dependent rect. 21 5
830 838.65 temperature 10.0 270 > th dose independent rect. 14 7
831 838.65 temperature 10.0 270 > th dose independent rect. 21 17
832 838.65 atmosphere 995.0 270 > th dose independent rect. 21 17
844 839.14 atmosphere 1015.0 270 < th dose dependent rect. 2 6
855 839.60 atmosphere 1015.0 270 < th dose independent rect. 22 3
862 839.77 radiation 10.0 14400 < th dose dependent rect. 24 4
909 840.79 wind 9.0 270 < th dose dependent rect. 20 7
922 841.52 atmosphere 1015.0 270 < th dose independent rect. 21 5
975 842.22 wind 9.0 270 < th dose independent rect. 21 17