BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0205700 Os10g0205700|AK060177
         (276 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15780.1  | chr5:5144898-5146297 REVERSE LENGTH=402             69   4e-12

>AT5G15780.1 | chr5:5144898-5146297 REVERSE LENGTH=402
          Length = 401

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 60  VSGAPVAVRCHDGNGRDVFRQQALTDRRGEFRVHLPPEAKSRLASVTSCSVKLLXXXXXX 119
           +SGA VAV C D N +  FRQ+  TD+RGEF+V LP      +  +  CSVKLL      
Sbjct: 64  ISGALVAVECIDENSKPSFRQEVKTDKRGEFKVKLPFSVSKHVKKIKRCSVKLLSSSQPY 123

Query: 120 XXXXXXXXXXXXXXGFRLAATKHNGGDGARVFNAGAFAV----HPELCDDKGI 168
                           RL +  H  G+  RVF+AG F       PE+C  K I
Sbjct: 124 CSIASSATSSSLK---RLKSNHH--GENTRVFSAGFFTFRPENQPEICSQKPI 171



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,144,540
Number of extensions: 80759
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)