BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0205700 Os10g0205700|AK060177
         (276 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0205700  Conserved hypothetical protein                      267   7e-72

>Os10g0205700 Conserved hypothetical protein
          Length = 276

 Score =  267 bits (682), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 136/170 (80%), Positives = 136/170 (80%)

Query: 1   MVATARMHAWQLLLVAVVISCFHCHLAAHHGGKNVRQPPXXXXXXXXXXXXXXDATKAAV 60
           MVATARMHAWQLLLVAVVISCFHCHLAAHHGGKNVRQPP              DATKAAV
Sbjct: 1   MVATARMHAWQLLLVAVVISCFHCHLAAHHGGKNVRQPPSSVVVVVGSVHSGSDATKAAV 60

Query: 61  SGAPVAVRCHDGNGRDVFRQQALTDRRGEFRVHLPPEAKSRLASVTSCSVKLLXXXXXXX 120
           SGAPVAVRCHDGNGRDVFRQQALTDRRGEFRVHLPPEAKSRLASVTSCSVKLL       
Sbjct: 61  SGAPVAVRCHDGNGRDVFRQQALTDRRGEFRVHLPPEAKSRLASVTSCSVKLLASNAARP 120

Query: 121 XXXXXXXXXXXXXGFRLAATKHNGGDGARVFNAGAFAVHPELCDDKGIFF 170
                        GFRLAATKHNGGDGARVFNAGAFAVHPELCDDKGIFF
Sbjct: 121 CDDAAATSAATARGFRLAATKHNGGDGARVFNAGAFAVHPELCDDKGIFF 170



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,716,804
Number of extensions: 170204
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)