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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0198900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0233) R2 : 3.33e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00604 (0.0491) R2dN8 : 4.3e-05 R2N8 : 3.33e-05
σ : 0.439
deviance : 88.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.32 0.434 3.17 -0.0452 0.0349 -0.271 -0.0114 1.44 -0.0141 12.9 1.1 15 -- --
87.36 0.435 3.15 0.0103 0.0268 -0.197 0.154 -- -0.000668 14.1 1.1 14 -- --
85.32 0.43 3.17 -0.0453 0.035 -0.271 -- 1.44 -0.0141 13 1.1 14 -- --
87.28 0.435 3.16 0.0246 0.0304 -0.189 -- -- -0.0018 13.5 1.107 11 -- --
85.39 0.43 3.17 -0.0448 -- -0.257 -- 1.43 -0.0148 -- 1.105 14 -- --
88.12 0.44 3.16 0.0435 0.0573 -- -0.13 -- -0.00297 5.83 -- -- -- --
88.15 0.44 3.16 0.0429 0.058 -- -- -- -0.0023 6.63 -- -- -- --
86.25 0.433 3.16 0.0143 -- -0.27 -- -- -0.00173 -- 0.9681 4 -- --
86.6 0.433 3.16 -- 0.0464 -0.227 -- -- 0.00387 13 1.175 6 -- --
88.32 0.439 3.16 0.0443 -- -- -- -- -0.00113 -- -- -- -- --
88.2 0.439 3.16 -- 0.0585 -- -- -- -0.00708 6.58 -- -- -- --
86.26 0.433 3.16 -- -- -0.271 -- -- -0.00341 -- 0.9509 4 -- --
88.37 0.439 3.16 -- -- -- -- -- -0.00604 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.22 wind 1.0 10 < th dose independent rect. 15 7
2 74.25 wind 1.0 10 < th dose independent rect. 17 5
4 74.26 wind 1.0 10 < th dose dependent rect. 15 7
5 74.27 wind 1.0 10 < th dose independent rect. 21 1
9 74.27 wind 1.0 10 < th dose dependent rect. 21 1
21 81.23 wind 1.0 10 < th dose independent rect. 9 18
24 81.53 wind 1.0 10 < th dose independent rect. 15 12
26 81.55 wind 1.0 10 < th dose independent rect. 17 10
29 81.57 wind 1.0 10 < th dose independent rect. 21 6
34 81.74 precipitation 0.1 270 > th dose independent rect. 20 1
35 81.74 precipitation 0.1 270 > th dose dependent rect. 20 1
37 81.82 wind 3.0 10 < th dose dependent rect. 1 2
41 81.87 radiation 1.0 43200 < th dose dependent rect. 3 1
42 81.94 wind 1.0 30 < th dose independent rect. 1 2
48 82.46 wind 1.0 10 > th dose independent sin 18 NA
51 82.72 atmosphere 1010.0 10 < th dose dependent rect. 2 1
52 82.73 temperature 20.0 10 > th dose independent rect. 2 1
55 82.78 wind 1.0 10 < th dose independent sin 18 NA
56 82.78 temperature 20.0 10 > th dose dependent rect. 2 1
66 82.91 humidity 90.0 30 > th dose independent rect. 2 1
67 82.91 atmosphere 1000.0 30 > th dose independent rect. 2 1
75 82.93 humidity 70.0 30 > th dose dependent rect. 2 1
91 82.96 temperature 10.0 30 > th dose independent rect. 2 1
93 82.96 temperature 30.0 30 < th dose independent rect. 2 1
94 82.96 humidity 50.0 30 > th dose independent rect. 2 1
98 82.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
100 82.96 radiation 1.0 30 < th dose independent rect. 2 1
105 82.96 precipitation 0.1 30 < th dose independent rect. 2 1
106 82.96 temperature 10.0 30 > th dose independent rect. 3 23
107 82.96 radiation 1.0 30 < th dose dependent rect. 2 1
112 82.96 precipitation 0.1 30 < th dose dependent rect. 2 1
114 82.98 atmosphere 995.0 30 > th dose dependent rect. 2 1
117 82.99 atmosphere 1005.0 90 > th dose dependent rect. 2 1
136 83.10 temperature 30.0 30 < th dose dependent rect. 2 1
137 83.10 radiation 1.0 4320 < th dose dependent rect. 3 1
176 83.21 wind 9.0 1440 < th dose independent rect. 3 1
177 83.21 temperature 10.0 1440 > th dose independent rect. 3 1
180 83.21 temperature 30.0 1440 < th dose independent rect. 3 1
184 83.21 humidity 50.0 1440 > th dose independent rect. 3 1
193 83.21 atmosphere 995.0 1440 > th dose independent rect. 3 1
194 83.21 radiation 1.0 1440 < th dose independent rect. 3 1
218 83.21 temperature 10.0 1440 > th dose independent rect. 4 23
228 83.26 wind 1.0 30 > th dose independent rect. 2 1
232 83.29 atmosphere 995.0 10 > th dose independent rect. 3 23
243 83.42 atmosphere 1005.0 10 > th dose dependent rect. 21 2
249 83.48 humidity 60.0 90 < th dose dependent rect. 9 1
264 83.49 atmosphere 1005.0 30 > th dose independent rect. 20 3
267 83.51 precipitation 0.1 30 < th dose independent rect. 3 23
270 83.51 precipitation 0.1 30 < th dose dependent rect. 3 23
274 83.57 humidity 60.0 90 < th dose independent rect. 9 1
338 83.84 humidity 80.0 10 > th dose dependent rect. 22 1
361 83.95 atmosphere 995.0 4320 > th dose independent rect. 22 2
364 83.98 wind 3.0 10 < th dose dependent rect. 20 7
372 84.04 temperature 20.0 10 > th dose dependent rect. 21 2
388 84.15 wind 3.0 10 < th dose dependent rect. 7 20
391 84.19 humidity 60.0 30 > th dose independent rect. 21 13
403 84.26 wind 9.0 30 < th dose independent rect. 3 23
407 84.29 humidity 50.0 30 > th dose independent rect. 3 23
437 84.33 wind 3.0 10 < th dose dependent rect. 14 13
440 84.34 wind 5.0 10 < th dose dependent rect. 20 3
459 84.40 wind 3.0 10 < th dose dependent rect. 9 18
466 84.42 temperature 10.0 90 > th dose dependent rect. 23 8
471 84.45 wind 7.0 30 < th dose independent rect. 20 14
479 84.48 temperature 10.0 30 > th dose dependent rect. 23 10
490 84.53 temperature 10.0 1440 > th dose independent rect. 11 10
494 84.53 temperature 10.0 1440 > th dose independent rect. 21 14
497 84.53 atmosphere 995.0 1440 > th dose independent rect. 21 14
501 84.55 wind 9.0 30 < th dose independent rect. 10 10
502 84.55 temperature 10.0 30 > th dose independent rect. 10 10
504 84.55 atmosphere 1015.0 30 < th dose independent rect. 10 10
514 84.55 temperature 10.0 30 > th dose independent rect. 20 14
516 84.55 atmosphere 995.0 30 > th dose independent rect. 20 14
523 84.57 temperature 20.0 30 > th dose independent rect. 20 3
524 84.57 temperature 20.0 30 > th dose independent rect. 9 14
525 84.57 precipitation 0.1 30 < th dose independent rect. 20 14
526 84.57 wind 1.0 10 > th dose independent rect. 23 23
530 84.57 precipitation 0.1 30 < th dose dependent rect. 20 14
540 84.58 radiation 40.0 10 < th dose independent rect. 23 21
543 84.59 atmosphere 995.0 30 > th dose independent rect. 10 10
566 84.62 precipitation 0.1 10 < th dose independent rect. 10 10
574 84.62 precipitation 0.1 10 < th dose dependent rect. 10 10
577 84.63 radiation 10.0 10 < th dose independent rect. 3 22
600 84.66 temperature 30.0 90 < th dose independent rect. 20 14
605 84.67 precipitation 0.1 30 < th dose independent rect. 9 14
607 84.67 precipitation 0.1 30 < th dose dependent rect. 9 14
611 84.68 wind 1.0 10 > th dose independent rect. 21 14
620 84.69 precipitation 0.1 30 < th dose independent rect. 7 16
624 84.69 precipitation 0.1 30 < th dose dependent rect. 7 16
625 84.70 temperature 20.0 10 > th dose independent rect. 22 1
632 84.72 wind 7.0 30 < th dose independent rect. 9 14
639 84.73 humidity 70.0 30 > th dose dependent rect. 20 3
647 84.75 humidity 70.0 30 > th dose independent rect. 23 10
659 84.77 humidity 80.0 30 > th dose independent rect. 20 3
662 84.77 wind 9.0 10 < th dose dependent rect. 9 14
663 84.78 radiation 10.0 30 > th dose independent rect. 9 1
666 84.79 wind 3.0 10 < th dose independent rect. 9 1
669 84.79 temperature 10.0 1440 > th dose independent rect. 24 10
672 84.79 atmosphere 995.0 1440 > th dose independent rect. 24 10
673 84.79 temperature 10.0 1440 > th dose independent rect. 10 14
683 84.80 wind 1.0 10 > th dose independent rect. 10 10
684 84.80 radiation 30.0 30 < th dose independent rect. 23 10
688 84.80 wind 7.0 30 < th dose independent rect. 7 16
692 84.81 precipitation 0.1 10 < th dose independent rect. 22 1
696 84.81 temperature 10.0 1440 > th dose independent rect. 24 8
699 84.81 temperature 30.0 1440 < th dose independent rect. 24 8
703 84.81 humidity 50.0 1440 > th dose independent rect. 24 8
708 84.81 atmosphere 995.0 1440 > th dose independent rect. 24 8
711 84.81 radiation 10.0 10 < th dose independent rect. 23 11
713 84.81 temperature 10.0 1440 > th dose independent rect. 8 16
717 84.81 precipitation 0.1 10 < th dose dependent rect. 22 1
720 84.82 humidity 90.0 10 > th dose independent rect. 22 1
730 84.82 radiation 40.0 30 < th dose dependent rect. 23 10
733 84.83 wind 1.0 10 > th dose independent rect. 23 8
750 84.84 wind 9.0 30 < th dose independent rect. 23 10
753 84.84 temperature 10.0 30 > th dose independent rect. 23 10
754 84.84 temperature 30.0 30 < th dose independent rect. 23 10
756 84.84 humidity 50.0 30 > th dose independent rect. 23 10
758 84.84 atmosphere 995.0 30 > th dose independent rect. 23 10
762 84.84 temperature 10.0 30 > th dose independent rect. 9 14
767 84.84 atmosphere 1015.0 30 < th dose independent rect. 9 14
840 84.88 radiation 40.0 10 < th dose dependent rect. 3 22
842 84.89 wind 9.0 4320 < th dose independent rect. 22 2
857 84.89 wind 9.0 30 < th dose independent rect. 23 8
858 84.89 temperature 10.0 30 > th dose independent rect. 23 8
859 84.89 temperature 30.0 30 < th dose independent rect. 23 8
860 84.89 humidity 50.0 30 > th dose independent rect. 23 8
863 84.89 atmosphere 995.0 30 > th dose independent rect. 23 8
864 84.89 radiation 20.0 30 < th dose independent rect. 23 8
867 84.89 temperature 10.0 30 > th dose independent rect. 7 16
869 84.89 atmosphere 1015.0 30 < th dose independent rect. 7 16
879 84.90 wind 7.0 10 < th dose independent rect. 22 1
881 84.90 temperature 10.0 10 > th dose independent rect. 22 1
883 84.90 temperature 30.0 10 < th dose independent rect. 22 1
884 84.90 humidity 50.0 10 > th dose independent rect. 22 1
887 84.90 atmosphere 995.0 10 > th dose independent rect. 22 1
888 84.90 atmosphere 1010.0 10 < th dose independent rect. 22 1
890 84.90 radiation 1.0 10 < th dose independent rect. 22 1
902 84.90 temperature 10.0 10 > th dose independent rect. 23 23
903 84.90 radiation 1.0 10 < th dose dependent rect. 22 1
909 84.90 humidity 50.0 30 > th dose dependent rect. 23 10
916 84.92 wind 1.0 10 > th dose independent rect. 22 1
943 84.93 wind 1.0 90 > th dose independent rect. 10 10
977 84.95 wind 9.0 10 < th dose dependent rect. 7 16
997 84.97 temperature 15.0 30 > th dose dependent rect. 20 7
999 84.97 wind 9.0 10 < th dose dependent rect. 20 14