BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0198900 Os10g0198900|J075038P03
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68170.1 | chr1:25551925-25554258 FORWARD LENGTH=357 53 3e-08
AT1G44800.1 | chr1:16914342-16916858 REVERSE LENGTH=371 49 4e-07
AT4G01440.1 | chr4:596531-598512 FORWARD LENGTH=366 49 4e-07
AT1G25270.1 | chr1:8857726-8859909 FORWARD LENGTH=356 49 5e-07
AT4G08300.1 | chr4:5245024-5248153 FORWARD LENGTH=374 49 5e-07
AT3G18200.1 | chr3:6234509-6236059 REVERSE LENGTH=361 48 1e-06
AT2G40900.1 | chr2:17063396-17065514 REVERSE LENGTH=395 45 6e-06
>AT1G68170.1 | chr1:25551925-25554258 FORWARD LENGTH=357
Length = 356
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 8 RLETFKLRSKAGLLKIVGVLVSVGGTMLVSLYKGKSLHLWNS--ILQHQKEQQTKSATNQ 65
R+E+ +L S GL K+ G L VGG ++ Y+G + LW++ L +Q ++ AT
Sbjct: 115 RMESVRLGSSVGLAKVFGTLFGVGGALVFIFYRGIEIRLWSTHVNLVNQPRDSSRDATTH 174
Query: 66 ---LRGTIFLAGSSLTFACWYLVQVIIYKH 92
+ G + + G +++ + W+L+QV I K
Sbjct: 175 HISILGALLVFGGNISISLWFLLQVKISKQ 204
>AT1G44800.1 | chr1:16914342-16916858 REVERSE LENGTH=371
Length = 370
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 8 RLETFKLRSKAGLLKIVGVLVSVGGTMLVSLYKGKSLHLWNSILQ--HQKEQQTKSATNQ 65
RLET R + K+VG +++VGG M+++LYKG ++ + + H T + +
Sbjct: 123 RLETVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSSTPTGQHW 182
Query: 66 LRGTIFLAGSSLTFACWYLVQ 86
+ GTI + GS T+A ++++Q
Sbjct: 183 VLGTIAIMGSISTWAAFFILQ 203
>AT4G01440.1 | chr4:596531-598512 FORWARD LENGTH=366
Length = 365
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 8 RLETFKLRSKAGLLKIVGVLVSVGGTMLVSLYKGKSLHLWNSILQHQ--KEQQTKSATNQ 65
R+E ++SKAG+ ++G L+ +GG +L+++YKG L + HQ N
Sbjct: 122 RVEKLNMKSKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAMKPENW 181
Query: 66 LRGTIFLAGSSLTFACWYLVQ 86
+ G + L S F W L+Q
Sbjct: 182 IIGCVLLFAGSSCFGSWMLIQ 202
>AT1G25270.1 | chr1:8857726-8859909 FORWARD LENGTH=356
Length = 355
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 8 RLETFKLRSKAGLLKIVGVLVSVGGTMLVSLYKGKSLHLWNSILQHQKEQQTKSATNQ-- 65
R+ET +L S G K+VG L+ G ++ YKG +H+W++ + K T AT
Sbjct: 115 RMETLRLGSNEGRAKLVGTLLGACGALVFVFYKGIEIHIWSTHVDLLKGSHTGRATTNHH 174
Query: 66 --LRGTIFLAGSSLTFACWYLVQVIIYKH 92
+ G + + GS+++ + W L+Q I K
Sbjct: 175 VSILGVLMVLGSNVSTSLWLLLQAKIGKE 203
>AT4G08300.1 | chr4:5245024-5248153 FORWARD LENGTH=374
Length = 373
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 8 RLETFKLRSKAGLLKIVGVLVSVGGTMLVSLYKGKSLHLWNSILQ--HQKEQQTKSAT-- 63
R+ET L+ L K++G ++VGG M+++LYKG ++ L+ + H T S T
Sbjct: 123 RIETVNLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTD 182
Query: 64 -NQLRGTIFLAGSSLTFACWYLVQVIIYK 91
N + GT+ + GS T+A ++++Q K
Sbjct: 183 QNWVTGTLAVMGSITTWAGFFILQSFTLK 211
>AT3G18200.1 | chr3:6234509-6236059 REVERSE LENGTH=361
Length = 360
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 8 RLETFKLRSKAGLLKIVGVLVSVGGTMLVSLYKGKSLHLWNSILQHQKEQQTKSATNQ-- 65
RLE L K G+ K++G LVS+GG +++LY+G +++ L QKE+ S +
Sbjct: 124 RLEHIDLVRKHGVAKVLGTLVSIGGATVITLYRG--FPIFDQGLNMQKEEVVGSDNSHSL 181
Query: 66 LRGTIFLAGSSLTFACWYLVQVIIYKH 92
G ++L G L++A W ++Q + K
Sbjct: 182 TLGWLYLMGHCLSWAGWMVLQAPVLKQ 208
>AT2G40900.1 | chr2:17063396-17065514 REVERSE LENGTH=395
Length = 394
Score = 45.4 bits (106), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 8 RLETFKLRSKAGLLKIVGVLVSVGGTMLVSLYKGKSLHLWNSILQHQKEQQTKSATNQLR 67
R+E ++R L+K++G LV+V G++L+ YKG ++ + S H + + L+
Sbjct: 123 RMEKVEMRKVRCLVKVMGTLVTVVGSILMIFYKGPFINFFRS---HLTAASSPPTADYLK 179
Query: 68 GTIFLAGSSLTFACWYLVQVIIYK 91
+FL +SL++A ++++Q K
Sbjct: 180 AAVFLLLASLSWASFFVLQAATLK 203
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,767,410
Number of extensions: 55700
Number of successful extensions: 300
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 10
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)