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Os10g0155400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.36 (0.0296) R2 : 0.674
β1 : -2.71 (0.11) R2dD : 0.471 R2D : 0.339
β2 : 1.28 (0.077) R2dC : 0.193 R2C : 0.192
β3 : 0.841 (0.079) R2dE : 0.0943 R2E : 0.0391
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.27 (0.0645) R2dN8 : 0.0185 R2N8 : -0.00174
σ : 0.551
deviance : 140.1
__
_____
C
peak time of C : 5.42
E
wheather : temperature
threshold : 33
memory length : 1136
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.12 0.544 7.24 -1.66 1.25 0.145 -1.36 6.49 -0.272 5.4 31.89 1172 -- --
136.89 0.545 7.36 -2.63 1.22 0.804 -0.991 -- -0.24 5.22 33 1166 -- --
138.59 0.548 7.24 -1.7 1.24 0.163 -- 6.33 -0.268 5.51 31.93 1157 -- --
140.1 0.551 7.36 -2.71 1.28 0.841 -- -- -0.27 5.42 33 1136 -- --
218.33 0.688 7.24 -1.59 -- 0.193 -- 6.9 -0.227 -- 32.2 1197 -- --
172.72 0.616 7.4 -2.52 1.32 -- -1.19 -- -0.439 5.13 -- -- -- --
176.28 0.622 7.4 -2.52 1.32 -- -- -- -0.433 5.15 -- -- -- --
221.35 0.693 7.37 -2.71 -- 0.954 -- -- -0.226 -- 32.9 1197 -- --
332.07 0.849 7.31 -- 1.24 0.467 -- -- -0.0765 5.28 34.11 1932 -- --
267.05 0.764 7.41 -2.47 -- -- -- -- -0.4 -- -- -- -- --
343.56 0.867 7.33 -- 1.27 -- -- -- -0.153 5.22 -- -- -- --
411.47 0.945 7.3 -- -- 0.822 -- -- 0.0839 -- 33.1 1134 -- --
428.33 0.966 7.35 -- -- -- -- -- -0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.84 temperature 25.0 270 < th dose independent rect. 1 5
5 125.29 humidity 50.0 90 > th dose dependent rect. 17 10
6 125.45 temperature 10.0 270 > th dose dependent rect. 12 9
7 126.52 temperature 25.0 90 < th dose independent rect. 3 6
10 126.58 temperature 30.0 90 < th dose dependent rect. 3 6
12 126.68 temperature 25.0 270 < th dose independent rect. 3 2
14 127.12 temperature 30.0 270 < th dose dependent rect. 1 5
15 127.15 humidity 50.0 90 > th dose dependent rect. 19 8
18 127.48 humidity 50.0 270 > th dose dependent rect. 17 8
27 128.06 wind 5.0 270 < th dose independent rect. 1 5
29 128.35 radiation 1.0 270 < th dose independent rect. 15 11
31 128.55 radiation 1.0 270 < th dose dependent rect. 15 11
34 128.61 wind 1.0 270 > th dose independent rect. 3 1
42 128.84 precipitation 0.1 270 < th dose independent rect. 1 5
44 128.84 precipitation 0.1 270 < th dose dependent rect. 1 5
76 129.51 humidity 50.0 270 > th dose independent rect. 6 19
79 129.58 humidity 60.0 90 > th dose dependent rect. 21 6
85 129.69 temperature 10.0 270 > th dose independent rect. 1 5
88 129.69 humidity 50.0 270 > th dose independent rect. 1 5
91 129.69 atmosphere 995.0 270 > th dose independent rect. 1 5
92 129.69 atmosphere 1015.0 270 < th dose independent rect. 1 5
93 129.69 radiation 20.0 270 < th dose independent rect. 1 5
96 129.69 temperature 10.0 270 > th dose independent rect. 6 19
98 129.70 temperature 30.0 270 < th dose dependent rect. 3 2
99 129.71 temperature 30.0 270 < th dose independent rect. 6 19
102 129.76 radiation 1.0 90 < th dose dependent rect. 9 18
115 130.04 radiation 40.0 90 < th dose dependent rect. 3 6
116 130.06 wind 9.0 270 < th dose independent rect. 6 19
119 130.17 precipitation 0.1 270 < th dose independent rect. 14 16
121 130.17 precipitation 0.1 270 < th dose dependent rect. 14 16
123 130.21 radiation 40.0 270 < th dose dependent rect. 1 5
129 130.39 wind 5.0 270 < th dose independent rect. 3 2
131 130.41 precipitation 0.1 270 < th dose independent rect. 3 2
133 130.41 precipitation 0.1 270 < th dose dependent rect. 3 2
158 130.70 atmosphere 995.0 270 > th dose independent rect. 6 19
171 130.89 wind 1.0 270 > th dose independent rect. 1 5
185 131.01 wind 9.0 90 < th dose dependent rect. 3 5
196 131.15 precipitation 0.1 90 < th dose independent rect. 3 16
197 131.15 precipitation 0.1 90 < th dose dependent rect. 3 16
198 131.20 precipitation 0.1 90 < th dose independent rect. 3 18
199 131.20 precipitation 0.1 90 < th dose dependent rect. 3 18
205 131.36 humidity 80.0 90 > th dose independent rect. 21 6
207 131.46 wind 9.0 270 < th dose independent rect. 14 16
210 131.51 humidity 50.0 90 > th dose dependent rect. 3 6
211 131.54 humidity 80.0 720 < th dose dependent rect. 20 1
212 131.62 radiation 1.0 270 < th dose dependent rect. 3 2
213 131.62 wind 9.0 270 < th dose dependent rect. 1 5
215 131.64 wind 9.0 270 < th dose independent rect. 6 8
218 131.67 temperature 10.0 270 > th dose independent rect. 3 2
221 131.67 humidity 50.0 270 > th dose independent rect. 3 2
224 131.67 atmosphere 995.0 270 > th dose independent rect. 3 2
225 131.67 atmosphere 1010.0 270 < th dose independent rect. 3 2
227 131.67 radiation 20.0 270 < th dose independent rect. 3 2
230 131.67 temperature 10.0 270 > th dose independent rect. 5 22
234 131.71 precipitation 0.1 270 < th dose independent rect. 6 19
235 131.71 precipitation 0.1 270 < th dose dependent rect. 6 19
236 131.72 radiation 40.0 270 < th dose dependent rect. 3 2
244 131.81 precipitation 0.1 270 < th dose independent rect. 1 18
245 131.81 precipitation 0.1 270 < th dose dependent rect. 1 18
267 131.89 radiation 1.0 270 < th dose independent rect. 3 2
270 131.90 temperature 10.0 10 > th dose dependent rect. 14 8
288 132.02 temperature 30.0 270 < th dose independent rect. 17 8
292 132.07 radiation 20.0 90 < th dose independent rect. 3 6
297 132.11 temperature 10.0 270 > th dose independent rect. 6 8
298 132.11 atmosphere 995.0 270 > th dose independent rect. 6 8
299 132.11 atmosphere 1015.0 270 < th dose independent rect. 6 8
301 132.11 temperature 10.0 270 > th dose independent rect. 14 16
312 132.24 wind 9.0 270 < th dose dependent rect. 3 2
317 132.32 precipitation 0.1 270 < th dose independent rect. 6 8
319 132.32 precipitation 0.1 270 < th dose dependent rect. 6 8
335 132.43 atmosphere 1000.0 90 > th dose independent rect. 21 6
349 132.53 wind 9.0 270 < th dose independent rect. 5 22
373 132.75 humidity 50.0 270 > th dose independent rect. 6 7
374 132.75 humidity 50.0 270 > th dose dependent rect. 1 5
378 132.78 wind 9.0 90 < th dose dependent rect. 19 8
386 132.92 humidity 60.0 270 > th dose independent rect. 17 9
391 132.95 temperature 10.0 90 > th dose independent rect. 19 8
392 132.95 temperature 30.0 90 < th dose independent rect. 19 8
393 132.95 humidity 50.0 90 > th dose independent rect. 19 8
395 132.95 atmosphere 995.0 90 > th dose independent rect. 19 8
396 132.95 radiation 1.0 90 < th dose independent rect. 19 8
401 132.95 temperature 10.0 90 > th dose independent rect. 3 16
402 132.95 atmosphere 1015.0 90 < th dose independent rect. 3 16
409 132.96 wind 9.0 90 < th dose independent rect. 19 8
428 133.05 precipitation 0.1 90 < th dose independent rect. 21 6
429 133.05 precipitation 0.1 90 < th dose dependent rect. 21 6
432 133.06 temperature 10.0 90 > th dose independent rect. 21 6
433 133.06 temperature 30.0 90 < th dose independent rect. 21 6
434 133.06 humidity 50.0 90 > th dose independent rect. 21 6
438 133.06 radiation 1.0 90 < th dose independent rect. 21 6
443 133.06 temperature 10.0 90 > th dose independent rect. 3 18
444 133.06 atmosphere 1015.0 90 < th dose independent rect. 3 18
445 133.06 radiation 1.0 90 < th dose dependent rect. 21 6
450 133.08 wind 9.0 90 < th dose independent rect. 21 6
482 133.32 humidity 50.0 270 > th dose dependent rect. 3 2
488 133.36 temperature 10.0 270 > th dose independent rect. 19 6
491 133.36 atmosphere 995.0 270 > th dose independent rect. 19 6
497 133.36 temperature 10.0 270 > th dose independent rect. 1 18
498 133.36 atmosphere 1015.0 270 < th dose independent rect. 1 18
505 133.37 wind 9.0 270 < th dose independent rect. 19 6
516 133.47 precipitation 0.1 90 < th dose independent rect. 19 8
518 133.47 precipitation 0.1 90 < th dose dependent rect. 19 8
543 133.57 radiation 1.0 270 > th dose independent rect. 6 7
548 133.59 precipitation 0.1 10 < th dose independent rect. 3 5
549 133.59 precipitation 0.1 10 < th dose dependent rect. 3 5
558 133.63 wind 9.0 270 < th dose independent rect. 1 18
595 133.79 wind 9.0 90 < th dose independent rect. 3 16
668 134.14 wind 9.0 90 < th dose dependent rect. 21 6
670 134.15 precipitation 0.1 270 < th dose independent rect. 19 6
671 134.15 wind 9.0 90 < th dose independent rect. 3 18
672 134.15 precipitation 0.1 270 < th dose dependent rect. 19 6
696 134.29 precipitation 0.1 270 < th dose independent rect. 12 9
697 134.29 precipitation 0.1 270 < th dose dependent rect. 12 9
713 134.38 wind 1.0 270 > th dose independent rect. 2 3
718 134.44 temperature 30.0 270 < th dose independent rect. 6 8
720 134.44 humidity 50.0 270 > th dose dependent rect. 7 18
733 134.50 atmosphere 1015.0 270 < th dose independent rect. 6 19
743 134.53 wind 1.0 270 > th dose independent rect. 12 9
789 134.85 wind 1.0 270 > th dose independent rect. 19 6
791 134.86 humidity 50.0 90 > th dose dependent rect. 9 18
859 134.99 temperature 15.0 270 > th dose independent rect. 12 9
908 135.18 radiation 40.0 270 < th dose independent rect. 14 16
943 135.34 humidity 80.0 10 > th dose independent rect. 21 6
955 135.39 wind 9.0 90 < th dose dependent rect. 8 19
958 135.40 wind 1.0 270 > th dose independent rect. 7 18
961 135.41 wind 1.0 270 > th dose independent rect. 6 7
962 135.41 precipitation 0.1 10 < th dose independent rect. 8 19
963 135.41 precipitation 0.1 10 < th dose dependent rect. 8 19
971 135.45 wind 9.0 270 < th dose independent rect. 21 15
978 135.47 atmosphere 995.0 90 > th dose independent rect. 3 16