BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0155400 Os10g0155400|Os10g0155400
(519 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34880.1 | chr4:16615549-16617424 FORWARD LENGTH=467 412 e-115
AT3G25660.1 | chr3:9339640-9342044 REVERSE LENGTH=538 88 1e-17
AT5G64440.1 | chr5:25766229-25770260 FORWARD LENGTH=608 63 3e-10
AT5G07360.1 | chr5:2326925-2330011 REVERSE LENGTH=660 57 3e-08
>AT4G34880.1 | chr4:16615549-16617424 FORWARD LENGTH=467
Length = 466
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/493 (46%), Positives = 297/493 (60%), Gaps = 70/493 (14%)
Query: 26 FDLEEATVDSIRRAFADGELTSRGLVELYLSRAAALDPSLHAVVEXXXXXXXXXXXXXXX 85
F ++EAT++ IR AF + LTS+ LVELYL + L+P LHAV+E
Sbjct: 38 FSIQEATIEDIRVAFNEKRLTSKQLVELYLEAISKLNPILHAVIETNPDALIQAEIADRE 97
Query: 86 XXXXXXXXXXXXXXXXXXNGIPVLVKDNIXXXXXXXXLNATCGSLALVGSRPAGDAGVVE 145
+G+PVL+KD+I LN T GS AL+GS A DAGVV+
Sbjct: 98 RDLKNTTKLPIL------HGVPVLLKDSISTKDK---LNTTAGSFALLGSVVARDAGVVK 148
Query: 146 RLRRAGAVVLGTASLSEWCNFRAPGIPAGWSPRAGQGKNPYVPSATPCXXXXXXXXXXXX 205
RLR +GAV+LG ASLSEW +FR+ IP GWS
Sbjct: 149 RLRESGAVILGKASLSEWAHFRSFSIPDGWS----------------------------- 179
Query: 206 NMVAVTIGTETDGSIMCPSSYNSVVGIKPTVGLTSRAGVIIISPRMDTVG----TVSDAV 261
PS NSVVGIKP+VGLTSRAGV+ IS R D++G TVSDAV
Sbjct: 180 ----------------APSQ-NSVVGIKPSVGLTSRAGVVPISLRQDSIGPICRTVSDAV 222
Query: 262 HVLEAIVGYDPRDAEATRMALQYIPEDGYRQFLNIDGLRGKRLGILRKDFFRFPSGSVQQ 321
H+L+AIVGYDP D EAT+ A ++IPE GY+QFL GL+GKRLGI+ K
Sbjct: 223 HLLDAIVGYDPLD-EATKTASEFIPEGGYKQFLTTSGLKGKRLGIVMK----------HS 271
Query: 322 KVFDEHFNTISKMGAILVDNLEIPNMNIINDAVQSGERALMLAEFKLSLNSYLSELASSP 381
+ D H T+ + GAI+++NL IPN+ +I SGE +LAEFK+SLN+YL EL SP
Sbjct: 272 SLLDHHIKTLRREGAIVINNLTIPNIEVIVGGTDSGEEIALLAEFKMSLNAYLKELVKSP 331
Query: 382 VRSLSDIIDFNNKHPVEERMAEFGQSYLLQSEATDGTGPTEKKAIAKLNELCESGLEKIM 441
VRSL+D+I +N + +E++ E+GQ L +EAT G G EK A+ K+ EL +G+EK++
Sbjct: 332 VRSLADVIAYNEEFAEQEKVKEWGQEVFLTAEATSGMGEKEKTALQKMKELSRNGIEKLI 391
Query: 442 RVNQLDAIVSPGASAHSLLAIGGYPAITVPAGYASNGVPFAICFGGLKGSEPRLIEIAYS 501
N+LDAIV+ G+ S+LAIGGYP I VPAGY S GVP+ I FGGL+ SEP+LIEIA++
Sbjct: 392 EENKLDAIVTLGSDLSSVLAIGGYPGINVPAGYDSGGVPYGISFGGLRFSEPKLIEIAFA 451
Query: 502 FEQATKVRRPPTL 514
FEQAT +R+PP
Sbjct: 452 FEQATLIRKPPKF 464
>AT3G25660.1 | chr3:9339640-9342044 REVERSE LENGTH=538
Length = 537
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 32/290 (11%)
Query: 30 EATVDSIRRAFADGELTSRGLVELYLSRAAALDPSLHAVVEXXXXXXXXXXXXXXXXXXX 89
++ + + RR+ GE T+ + + YLSR +P L +
Sbjct: 43 QSQILTTRRSLLSGETTAVEIAKSYLSRIRLTEPQLKCFLHVSENVLKDAQEIDQRIAKG 102
Query: 90 XXXXXXXXXXXXXXNGIPVLVKDNIXXXXXXXXLNATCGSLALVGSRPAGDAGVVERLRR 149
G+ + VKDNI + +T S L RP DA V++++
Sbjct: 103 EELGPLA--------GVLIGVKDNICTQG----MPSTAASRILEHYRPPFDATAVKKIKE 150
Query: 150 AGAVVLGTASLSEWCNFRAPGIPAGWSPRAGQ-GKNPYVPSATPCXXXXXXXXXXXXNMV 208
G +V+G ++ E+ G+ + A Q NP+ S P
Sbjct: 151 LGGIVVGKTNMDEF------GMGSTTEASAFQVTANPWDLSRVPGGSSGGSAAAVAARQC 204
Query: 209 AVTIGTETDGSIMCPSSYNSVVGIKPTVGLTSRAGVIIISPRMDTVG----TVSDAVHVL 264
V++G++T GS+ P+S+ VVG+KPT G SR G++ + +D +G TV+DA +L
Sbjct: 205 MVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCFGSTVADAGMLL 264
Query: 265 EAIVGYDPRDAEATRMALQYIPEDGYRQFLNIDG-----LRGKRLGILRK 309
AI GYD D+ +++ Q +PE QFL++D L G ++GI+R+
Sbjct: 265 HAISGYDRFDSTSSK---QDVPE-FQSQFLSVDHFESKPLNGVKVGIIRE 310
>AT5G64440.1 | chr5:25766229-25770260 FORWARD LENGTH=608
Length = 607
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 161/408 (39%), Gaps = 62/408 (15%)
Query: 140 DAGVVERLRRAGAVVLGTASLSEWCNFRAPGI-PAGWSPRAGQGKNPYVPSATPCXXXXX 198
D+ VV +LR GA++LG A++ E G+ G + G +NP+ P
Sbjct: 231 DSAVVSKLRSCGAILLGKANMHEL------GMGTTGNNSNYGTTRNPHDPKRYTGGSSSG 284
Query: 199 XXXXXXXNMVAVTIGTETDGSIMCPSSYNSVVGIKPTVGLTSRAGVIIISPRMDTVG--- 255
+ + +GT+ GS+ PS+ + G+K T G T G + ++ +G
Sbjct: 285 SAAIVAAGLCSAALGTDGGGSVRIPSALCGITGLKTTYGRTDMTGSLCEGGTVEIIGPLA 344
Query: 256 -TVSDAVHVLEAIVGYDPRDAEATRMALQYIPEDGYRQFLNIDG---LRGKRLGILRKDF 311
++ DA V AI+G + A R L+ P + + L+ +G + RLG K F
Sbjct: 345 SSLEDAFLVYAAILG----SSSADRYNLKPSPP-CFPKLLSHNGSNAIGSLRLGKYTKWF 399
Query: 312 FRFPSGSVQQKVFD----EHFNTISKMGAILVDNLE-----------IPNMNIINDAVQS 356
S + K D N K+ I+V LE P ++ + ++
Sbjct: 400 NDVSSSDISDKCEDILKLLSNNHGCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEA 459
Query: 357 GERALMLAEFKLSLNSYLSELASSPVRSLSDIIDFNNKHPVEERMAE-----FGQSYLLQ 411
G+ + + + + S + S AS D+ + R+ E F ++
Sbjct: 460 GKNSKLSYDTRTSFAIFRSFSAS----------DYIAAQCLRRRLMEYHLNIFKDVDVIV 509
Query: 412 SEATDGTGPTEKKAIAKLNELCESGLEKIMRVNQLDAIVSPGASAHSLLAIGGYPAITVP 471
+ T T P K E +MR A +LL G+PAI+VP
Sbjct: 510 TPTTGMTAPVIPPDALKNGETNIQVTTDLMRF----------VLAANLL---GFPAISVP 556
Query: 472 AGYASNGVPFAICFGGLKGSEPRLIEIAYSFEQATKVRRPPTLQHSII 519
GY G+P + G +E ++ +A + E+ V + P + + I+
Sbjct: 557 VGYDKEGLPIGLQIMGRPWAEATVLGLAAAVEELAPVTKKPAIFYDIL 604
>AT5G07360.1 | chr5:2326925-2330011 REVERSE LENGTH=660
Length = 659
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 97/250 (38%), Gaps = 35/250 (14%)
Query: 44 ELTSRGLVELYLSRAAALDPSLHAVVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 103
++TS+ LV +YL + + L AVV
Sbjct: 216 QITSKELVRIYLKQLKRYNHVLEAVV-------TYTEELAYKQAKEADDLLSQGTYLGPL 268
Query: 104 NGIPVLVKDNIXXXXXXXXLNATCGSLALVGSRPAGDAGVVERLRRAGAVV---LGTASL 160
+GIP +KD + T GS + +A V +RL+ +GAV+ L T S+
Sbjct: 269 HGIPYGLKDIVAVPG----YKTTWGSTSFKDQFLDIEAWVYKRLKASGAVLVAKLVTGSM 324
Query: 161 SE---WCNFRAPGIPAGWSPRAGQGKNPYVPSATPCXXXXXXXXXXXXNMVAVTIGTETD 217
+ W G+ +NP+ MV IG+ET
Sbjct: 325 AYDDIWF--------------GGRTRNPWNIEEFSTGSSAGPAASTSAGMVPFAIGSETA 370
Query: 218 GSIMCPSSYNSVVGIKPTVGLTSRAGVIIISPRMDTVG----TVSDAVHVLEAIVGYDPR 273
GS+ P++ + ++PT G R GV+ IS +D +G T +D +L+AI G DP
Sbjct: 371 GSMTYPAARCGITALRPTFGSVGRTGVMSISESLDKLGPFCRTAADCAVILDAIKGKDPD 430
Query: 274 DAEATRMALQ 283
D + +A +
Sbjct: 431 DLSSREIAFE 440
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,238,716
Number of extensions: 355051
Number of successful extensions: 855
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 7
Length of query: 519
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 416
Effective length of database: 8,282,721
Effective search space: 3445611936
Effective search space used: 3445611936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)