Os10g0117800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Guanine nucleotide binding protein (G-protein), alpha subunit family protein.
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Os10g0117800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Guanine nucleotide binding protein (G-protein), alpha subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 233.71 | 0.718 | 3.52 | -0.137 | 0.405 | -0.314 | -0.78 | 7.13 | -0.0021 | 12.7 | 30.3 | 2783 | -- | -- |
| 238.12 | 0.719 | 3.67 | -1.3 | 0.322 | 0.427 | -1.22 | -- | 0.00229 | 12.6 | 31.95 | 5678 | -- | -- |
| 236.22 | 0.716 | 3.52 | -0.106 | 0.413 | -0.349 | -- | 7.55 | -0.00278 | 12.9 | 30.4 | 2718 | -- | -- |
| 239.59 | 0.721 | 3.73 | -1.36 | 0.376 | 0.505 | -- | -- | -0.229 | 12.1 | 32.5 | 11306 | -- | -- |
| 246.34 | 0.731 | 3.53 | -0.135 | -- | -0.413 | -- | 7.57 | -0.0248 | -- | 30.7 | 2714 | -- | -- |
| 248.46 | 0.739 | 3.7 | -1.26 | 0.354 | -- | -0.895 | -- | -0.107 | 12.5 | -- | -- | -- | -- |
| 251.9 | 0.743 | 3.7 | -1.3 | 0.357 | -- | -- | -- | -0.111 | 12.6 | -- | -- | -- | -- |
| 247.83 | 0.733 | 3.78 | -1.58 | -- | 0.695 | -- | -- | -0.418 | -- | 32.2 | 19710 | -- | -- |
| 293.06 | 0.797 | 3.66 | -- | 0.386 | 0.352 | -- | -- | 0.0966 | 11.9 | 32.7 | 4003 | -- | -- |
| 259.89 | 0.753 | 3.71 | -1.31 | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
| 296.38 | 0.805 | 3.67 | -- | 0.377 | -- | -- | -- | 0.0339 | 12.7 | -- | -- | -- | -- |
| 302.01 | 0.809 | 3.68 | -- | -- | 0.26 | -- | -- | 0.0792 | -- | 32.6 | 6175 | -- | -- |
| 305.26 | 0.816 | 3.67 | -- | -- | -- | -- | -- | 0.0287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 225.24 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 3 | 225.31 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 6 | 225.59 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 20 | 225.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 28 | 226.07 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 35 | 226.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 46 | 226.30 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 58 | 226.47 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 60 | 226.48 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 19 |
| 66 | 226.52 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 86 | 226.72 | atmosphere | 995 | 43200 | > th | dose independent | sin | 3 | NA |
| 87 | 226.72 | atmosphere | 995 | 43200 | < th | dose independent | sin | 3 | NA |
| 111 | 226.97 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 116 | 227.03 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 118 | 227.05 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 174 | 227.57 | atmosphere | 995 | 43200 | < th | dose independent | no | NA | NA |
| 177 | 227.57 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 191 | 227.67 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 217 | 227.83 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 233 | 227.88 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 286 | 228.18 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 297 | 228.22 | atmosphere | 995 | 43200 | > th | dose independent | no | NA | NA |
| 310 | 228.27 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 316 | 228.29 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 325 | 228.32 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 19 | NA |
| 358 | 228.44 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 372 | 228.50 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 374 | 228.50 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 388 | 228.58 | wind | 5 | 43200 | > th | dose independent | sin | 11 | NA |
| 398 | 228.60 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 415 | 228.66 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 448 | 228.74 | wind | 5 | 43200 | < th | dose independent | sin | 11 | NA |
| 468 | 228.81 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 562 | 229.13 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 610 | 229.28 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |
| 619 | 229.31 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 622 | 229.31 | wind | 5 | 43200 | > th | dose dependent | sin | 11 | NA |
| 636 | 229.36 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 638 | 229.37 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 661 | 229.44 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 674 | 229.48 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 678 | 229.50 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 685 | 229.52 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 695 | 229.54 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 758 | 229.70 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 768 | 229.73 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 800 | 229.78 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 802 | 229.79 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 803 | 229.79 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 804 | 229.79 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 813 | 229.81 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 861 | 229.89 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 895 | 229.94 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 1 |