BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0117800 Os10g0117800|AK108670
(440 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31930.1 | chr1:11465832-11468961 FORWARD LENGTH=849 460 e-130
AT2G23460.1 | chr2:9995699-9998945 FORWARD LENGTH=889 313 8e-86
AT4G34390.1 | chr4:16441579-16444840 FORWARD LENGTH=862 265 5e-71
AT2G26300.1 | chr2:11198087-11200822 FORWARD LENGTH=384 171 1e-42
>AT1G31930.1 | chr1:11465832-11468961 FORWARD LENGTH=849
Length = 848
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/453 (52%), Positives = 311/453 (68%), Gaps = 19/453 (4%)
Query: 1 ATLFSLPIPRGLKEDTTLYSSRF--VPEYXXXXXXXXXXXXXXXXXXXXTIFKQAKFLYG 58
LFSLP+P+G T SS + VP Y TIFKQAKFLYG
Sbjct: 396 CALFSLPVPQGQPRGTVQPSSNYATVPNYIEHKKIQKLLLLGIEGSGTSTIFKQAKFLYG 455
Query: 59 TEFSPEEILNLKLMIQSNVYKYLSTLLEWRXXXXXXXXXXXXXLGMSNHKGDGEPK---- 114
+FS EE+ ++KLM+QSN+Y+YLS LL+ R L GE
Sbjct: 456 NKFSVEELQDIKLMVQSNMYRYLSILLDGRERFEEEALSHTRGLNAVEGDSGGEEANDEG 515
Query: 115 AVQSTSSLYSLNQRLMHFANWLLEIVALGNLDAFFPAATREYAPIVEEVWKDPAIQATYK 174
V + S+Y+LN RL HF++WLL+I+A G+LDAFFPAATREYAP+VEEVWKDPAIQATY+
Sbjct: 516 TVTTPQSVYTLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQATYR 575
Query: 175 RKNELHFLPDVASYFLDRVVEISSNEYEPTETDILYAEGVNQWNGLSTLEFSLDDRGPLS 234
RK+ELHFLPDVA YFL R +E+SSNEYEP+E DI+YAEGV Q NGL+ +EFSL D P+S
Sbjct: 576 RKDELHFLPDVAEYFLSRAMEVSSNEYEPSERDIVYAEGVTQGNGLAFMEFSLSDHSPMS 635
Query: 235 DSYADKAGNP----AIQTKYQLIRMNSKGLTGGFKCLGMLEDIRAIIFCISLADYDQTWV 290
+SY + NP + Q KYQLIR+N+KG+ K + M ED+RA+IFCISL+DYDQ +
Sbjct: 636 ESYPE---NPDALSSPQPKYQLIRVNAKGMNDSCKWVEMFEDVRAVIFCISLSDYDQINI 692
Query: 291 --QSSG--EPCNKMIASRDLFEDVIRHPSFEDTPCVLLLNKYDAFEEKISRVPLTVCEWF 346
+SSG + NKMI S++LFE +++HP F+DTP +L+LNKYD FEEK++R PLT C+WF
Sbjct: 693 TPESSGTVQYQNKMIQSKELFESMVKHPCFKDTPFILILNKYDQFEEKLNRAPLTSCDWF 752
Query: 347 ADFSPVRPHHTSQTSLASHAYYYVAVKFKDLYSSVADGRKLFVFQTKALERRTVDDAFRY 406
+DF PVR ++ Q SLA AY+YVA+KFK LY S+ G+KLFV+Q +A +R VD+ F+Y
Sbjct: 753 SDFCPVRTNNNVQ-SLAYQAYFYVAMKFKLLYFSIT-GQKLFVWQARARDRANVDEGFKY 810
Query: 407 IREVLRWDDVKNSDAGYCSADESSYSVDMTTSP 439
+REVL+WD+ K ++S YS DM++SP
Sbjct: 811 VREVLKWDEEKEESYLNGGGEDSFYSTDMSSSP 843
>AT2G23460.1 | chr2:9995699-9998945 FORWARD LENGTH=889
Length = 888
Score = 313 bits (803), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 180/456 (39%), Positives = 266/456 (58%), Gaps = 35/456 (7%)
Query: 1 ATLFSLPIPRGLKEDTT---LYS--SRFVPEYXXXXXXXXXXXXXXXXXXXXTIFKQAKF 55
+ SLP+P + + LYS SR + ++ TIFKQAK
Sbjct: 446 CAVLSLPVPSKSTANASGEQLYSANSRSILDHLEHRTLQKILLVGNSGSGTSTIFKQAKI 505
Query: 56 LYG-TEFSPEEILNLKLMIQSNVYKYLSTLLEWRXXXXXXXXXXXXXLGMSNHK------ 108
LY F +E N+K++IQ+NVY YL LLE R L + N K
Sbjct: 506 LYKDVPFLEDERENIKVIIQTNVYGYLGMLLEGRERFEEEA------LALRNTKQCVLEN 559
Query: 109 ---GDGEPKAVQSTSSLYSLNQRLMHFANWLLEIVALGNLDAFFPAATREYAPIVEEVWK 165
+G+ K+ T ++YS+ RL F++WLL+ +A GNL FPAA+REYAP+VEE+W+
Sbjct: 560 IPADEGDAKSNDKTVTMYSIGPRLKAFSDWLLKTMAAGNLGVIFPAASREYAPLVEELWR 619
Query: 166 DPAIQATYKRKNELHFLPDVASYFLDRVVEISSNEYEPTETDILYAEGVNQWNGLSTLEF 225
D AIQATYKR++EL LP VASYFL+R +++ + +YEP++ DILYAEGV +GL+ L+F
Sbjct: 620 DAAIQATYKRRSELGLLPSVASYFLERAIDVLTPDYEPSDLDILYAEGVTSSSGLACLDF 679
Query: 226 SLDDRGPLSDSYADKAGNPAIQTKYQLIRMNSKGLTGGFKCLGMLEDIRAIIFCISLADY 285
S S+ D + + +YQLIR+ S+GL K + M ED+ ++F +S++DY
Sbjct: 680 SFPQTA--SEENLDPSDHHDSLLRYQLIRVPSRGLGENCKWIDMFEDVGMVVFVVSMSDY 737
Query: 286 DQTWVQSSGEPCNKMIASRDLFEDVIRHPSFEDTPCVLLLNKYDAFEEKISRVPLTVCEW 345
DQ S + NKM+ ++ LFE +I HP FE+ +L+LNKYD EEK+ RVPL CEW
Sbjct: 738 DQV----SEDGTNKMLLTKKLFESIITHPIFENMDFLLILNKYDLLEEKVERVPLARCEW 793
Query: 346 FADFSPVRPHH----TSQTSLASHAYYYVAVKFKDLYSSVADGRKLFVFQTKALERRTVD 401
F DF+PV H +L A++++AVKFK YSS+ G+KLFV +K+L+ +VD
Sbjct: 794 FQDFNPVVSRHRGSNNGNPTLGQLAFHFMAVKFKRFYSSLT-GKKLFVSSSKSLDPNSVD 852
Query: 402 DAFRYIREVLRWDDVKNSDAGYCSADESSYSVDMTT 437
+ + E+L+W + + + C ++ S YS + ++
Sbjct: 853 SSLKLAMEILKWSEERTN---ICMSEYSMYSTEPSS 885
>AT4G34390.1 | chr4:16441579-16444840 FORWARD LENGTH=862
Length = 861
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 220/378 (58%), Gaps = 27/378 (7%)
Query: 48 TIFKQAKFLYGTEFSPEEILNLKLMIQSNVYKYLSTLLEWRXXXXXXXXXXXXXLGMSNH 107
TI+KQA+ LY FS E+ +K +IQ+N+Y YL+ +LE MSN
Sbjct: 477 TIYKQARSLYNVSFSLEDRERIKFIIQTNLYTYLAMVLEAHERFEKE---------MSND 527
Query: 108 KGDGEPKAVQSTSSLYSLNQRLMHFANWLLEIVALGNLDAFFPAATREYAPIVEEVWKDP 167
+ G S S+N RL HF++W+L+ GNL FP ++RE A V ++W+ P
Sbjct: 528 QSSGNVGDETSAKPGNSINPRLKHFSDWVLKEKEDGNL-KIFPPSSRENAQTVADLWRVP 586
Query: 168 AIQATYKRKNELHFLPDVASYFLDRVVEISSNEYEPTETDILYAEGVNQWNGLSTLEFSL 227
AIQATYKR + LP A YFL+R++EIS +EY+P++ DIL AEG++ GLS ++FS
Sbjct: 587 AIQATYKRLRDT--LPRNAVYFLERILEISRSEYDPSDMDILQAEGLSSMEGLSCVDFSF 644
Query: 228 DDRGPLSDSYADKAGNPAIQTKYQLIRMNSKGLTGGFKCLGMLEDIRAIIFCISLADYDQ 287
+D + KYQLIR+N + L +K L M ED +IFC+SL DY +
Sbjct: 645 PSTSQEESLESDYQHD--TDMKYQLIRLNPRSLGENWKLLEMFEDADLVIFCVSLTDYAE 702
Query: 288 TWVQSSGEPCNKMIASRDLFEDVIRHPSFEDTPCVLLLNKYDAFEEKISRVPLTVCEWFA 347
G NKM+A++ LFE+++ HPS + +L+L K+D EEKI VPL CEWF
Sbjct: 703 NIEDGEGNIVNKMLATKQLFENMVTHPSLANKRFLLVLTKFDLLEEKIEEVPLRTCEWFE 762
Query: 348 DFSP-VRPHHTSQTS--LASHAYYYVAVKFKDLYSSVAD-----GR----KLFVFQTKAL 395
DF+P + + TS+ + +A A++Y+ KFK LY S+ + GR KLFV Q +L
Sbjct: 763 DFNPLISQNQTSRHNPPMAQRAFHYIGYKFKRLYDSILEPVNMRGRSFKPKLFVCQV-SL 821
Query: 396 ERRTVDDAFRYIREVLRW 413
E TVD+A RY RE+L+W
Sbjct: 822 ESDTVDNALRYAREILKW 839
>AT2G26300.1 | chr2:11198087-11200822 FORWARD LENGTH=384
Length = 383
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 193/369 (52%), Gaps = 52/369 (14%)
Query: 48 TIFKQAKFLYGTEFSPEEILNLKLMIQSNVYKYLSTLLEWRXXXXXXXXXXXXXLGMSNH 107
TIFKQ K L+ T F E+ + +I +NVY+ + L H
Sbjct: 53 TIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLL----------------------H 90
Query: 108 KGDGEPKAVQSTSSLYSLNQRLMHFANWLLEIVALGNLDAFFPAATREYAPIVEEVWKDP 167
G E ++ S+ Y L+ + L EI G LD +P T++ A +E +WKDP
Sbjct: 91 DGTKEFAQNETDSAKYMLSSESIAIGEKLSEIG--GRLD--YPRLTKDIAEGIETLWKDP 146
Query: 168 AIQATYKRKNELHFLPDVASYFLDRVVEISSNEYEPTETDILYAEGVNQWNGLSTLEFSL 227
AIQ T R NEL +PD Y ++ + +S Y PT+ D+LYA + G+ ++FS
Sbjct: 147 AIQETCARGNELQ-VPDCTKYLMENLKRLSDINYIPTKEDVLYAR--VRTTGVVEIQFS- 202
Query: 228 DDRGPLSDSYADKAGNPAIQTKYQLIRMNSKGLTGGFKCLGMLEDIRAIIFCISLADYDQ 287
P+ ++ K+G Y+L + + K + + E + A+IFC ++++YDQ
Sbjct: 203 ----PVGEN--KKSGEV-----YRLFDVGGQR-NERRKWIHLFEGVTAVIFCAAISEYDQ 250
Query: 288 TWVQSSGEPCNKMIASRDLFEDVIRHPSFEDTPCVLLLNKYDAFEEKISRVPLTVCEWFA 347
T + E N+M+ +++LF+ V++ P FE T +L LNK+D FE+K+ VPL VCEWF
Sbjct: 251 TLFED--EQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFR 308
Query: 348 DFSPVRPHHTSQTSLASHAYYYVAVKFKDL-YSSVADGR--KLF-VFQTKALERRTVDDA 403
D+ PV +S HAY +V KF++L Y + A R ++F +++T AL+++ V
Sbjct: 309 DYQPV----SSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT 364
Query: 404 FRYIREVLR 412
F+ + E LR
Sbjct: 365 FKLVDETLR 373
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,002,167
Number of extensions: 355168
Number of successful extensions: 817
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 4
Length of query: 440
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,310,137
Effective search space: 2808826306
Effective search space used: 2808826306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)