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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0116800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Purple acid phosphatase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0701) R2 : 0.367
β1 : 1.25 (0.224) R2dD : 0.161 R2D : -0.861
β2 : -- (--) R2dC : -- R2C : --
β3 : 12.8 (1.33) R2dE : 9.93 R2E : -7.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 24.4 (2.97) R2dD*E : 6.87 R2D*E : -8.5
γ1 : 0.0283 (0.072) R2dN8 : -4.89e-05 R2N8 : -0.482
σ : 0.603
deviance : 167.49
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.5562
memory length : 3585
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.02
open length of G : 0.887

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.52 0.61 3.54 1.4 0.272 11.8 -1.38 23.2 0.00869 13.8 1.019 4051 8.02 0.912
509.39 1.05 2.81 2.5 0.361 11.2 1.65 -- 0.638 1.47 0.441 3823 7.9 0.45
168.27 0.604 3.53 1.34 0.218 12 -- 23.3 0.00526 12.8 0.7968 3812 8.02 0.899
230.09 0.711 3.02 -0.955 0.288 1.19 -- -- -0.266 13.4 2.777 3851 8.58 3.69
167.49 0.603 3.48 1.25 -- 12.8 -- 24.4 0.0283 -- 0.5562 3585 8.02 0.887
222.88 0.7 3.02 -0.929 0.295 -- -1.6 -- -0.261 14.6 -- -- -- --
231.48 0.712 3.02 -0.971 0.296 -- -- -- -0.271 13.4 -- -- -- --
208.64 0.673 3.03 -0.455 -- 1.56 -- -- -0.268 -- 1.228 3371 7.78 4.2
210.68 0.676 3.02 -- 0.274 1.22 -- -- -0.0883 13.2 2.865 30965 8.07 3.22
236.86 0.719 3.02 -0.983 -- -- -- -- -0.278 -- -- -- -- --
256.33 0.749 2.99 -- 0.313 -- -- -- -0.163 13.5 -- -- -- --
210.27 0.675 3.02 -- -- 1.87 -- -- -0.06 -- 0.9165 3371 7.81 4.2
262.34 0.756 3 -- -- -- -- -- -0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.13 radiation 30 1440 < th dose independent rect. 16 2
2 176.84 radiation 30 1440 < th dose independent rect. 16 11
3 176.95 radiation 30 1440 < th dose independent rect. 16 8
7 177.16 radiation 1 4320 < th dose independent rect. 8 1
8 177.16 radiation 1 4320 < th dose dependent rect. 8 1
11 177.41 radiation 30 1440 < th dose independent rect. 16 4
16 178.35 radiation 30 1440 < th dose independent rect. 16 15
18 179.34 radiation 40 14400 < th dose independent rect. 19 13
19 179.39 radiation 1 4320 > th dose independent rect. 8 1
20 179.54 radiation 40 14400 < th dose independent rect. 21 11
21 179.56 radiation 40 14400 < th dose independent rect. 6 2
23 179.62 radiation 40 14400 < th dose independent rect. 17 15
30 180.86 radiation 40 14400 < th dose independent rect. 2 6
35 186.96 wind 1 14400 < th dose dependent rect. 18 1
36 187.13 atmosphere 1015 43200 > th dose independent rect. 19 1
37 187.54 temperature 20 1440 > th dose independent rect. 5 1
38 187.55 wind 1 14400 < th dose independent rect. 15 2
39 187.75 wind 1 14400 > th dose independent rect. 15 2
40 187.92 wind 1 14400 < th dose dependent rect. 15 2
41 187.97 temperature 20 1440 < th dose independent rect. 23 7
42 188.02 temperature 20 1440 < th dose independent rect. 5 1
43 188.14 temperature 25 720 < th dose independent rect. 9 2
45 188.28 temperature 20 1440 > th dose independent rect. 23 7
56 188.69 temperature 25 90 < th dose independent rect. 10 1
73 189.21 temperature 20 1440 < th dose independent rect. 23 2
79 189.27 atmosphere 1015 43200 < th dose independent rect. 16 4
86 189.42 radiation 20 43200 > th dose independent rect. 6 1
105 189.53 temperature 20 1440 > th dose independent rect. 23 2
110 189.64 humidity 60 43200 < th dose independent rect. 19 5
132 189.87 atmosphere 1015 43200 > th dose dependent rect. 19 2
136 189.93 temperature 25 1440 < th dose dependent rect. 2 1
137 189.94 temperature 20 1440 > th dose independent rect. 3 1
138 189.94 temperature 15 1440 > th dose dependent rect. 2 1
151 190.15 temperature 20 1440 < th dose independent rect. 3 1
170 190.35 radiation 1 4320 < th dose independent rect. 8 3
172 190.35 radiation 1 4320 < th dose dependent rect. 8 3
184 190.53 atmosphere 1015 43200 > th dose dependent rect. 14 1
193 190.61 humidity 60 43200 > th dose independent rect. 19 5
207 190.76 radiation 10 1440 < th dose independent rect. 16 1
220 190.85 atmosphere 1015 43200 < th dose independent rect. 15 1
232 190.92 wind 1 14400 < th dose independent rect. 18 1
238 190.97 atmosphere 1015 43200 > th dose independent rect. 15 1
252 191.03 radiation 30 43200 > th dose dependent rect. 7 1
278 191.23 radiation 40 1440 > th dose dependent rect. 10 1
289 191.40 humidity 60 43200 < th dose dependent rect. 19 2
304 191.56 humidity 60 43200 < th dose dependent rect. 19 4
320 191.68 radiation 1 14400 < th dose independent rect. 10 2
321 191.68 radiation 1 14400 < th dose dependent rect. 10 2
327 191.80 radiation 1 14400 > th dose independent rect. 10 2
352 192.11 temperature 20 720 > th dose dependent rect. 5 5
362 192.23 temperature 15 43200 < th dose independent rect. 1 1
379 192.26 temperature 15 43200 > th dose independent rect. 1 1
398 192.47 temperature 15 43200 > th dose independent rect. 3 1
400 192.48 temperature 15 43200 < th dose independent rect. 24 4
402 192.52 humidity 90 14400 > th dose dependent rect. 23 5
403 192.53 wind 1 14400 > th dose independent rect. 18 1
404 192.53 temperature 15 43200 > th dose independent rect. 1 3
408 192.57 temperature 15 43200 < th dose independent rect. 22 6
410 192.58 radiation 1 4320 > th dose independent rect. 8 4
418 192.62 temperature 15 43200 < th dose independent rect. 24 7
419 192.62 temperature 15 43200 < th dose independent rect. 20 8
420 192.62 temperature 15 43200 < th dose independent rect. 22 9
424 192.64 temperature 15 43200 < th dose independent rect. 20 11
436 192.70 temperature 25 720 < th dose dependent rect. 8 1
445 192.73 temperature 15 43200 > th dose independent rect. 22 6
468 192.80 temperature 15 43200 < th dose dependent rect. 2 1
473 192.81 humidity 80 14400 > th dose dependent rect. 2 2
484 192.84 temperature 15 43200 > th dose independent rect. 22 4
486 192.85 temperature 15 43200 < th dose independent sin 11 NA
513 192.90 humidity 90 14400 > th dose dependent rect. 24 3
569 193.03 temperature 15 43200 > th dose independent rect. 13 15
575 193.04 temperature 15 43200 < th dose independent rect. 5 2
609 193.11 humidity 90 4320 > th dose dependent rect. 18 1
619 193.13 temperature 30 720 < th dose dependent rect. 1 11
626 193.15 temperature 15 43200 > th dose independent sin 13 NA
634 193.15 temperature 15 43200 < th dose independent rect. 22 16
635 193.15 temperature 15 43200 < th dose independent rect. 20 18
644 193.16 radiation 40 90 > th dose dependent rect. 10 2
671 193.20 temperature 15 43200 > th dose independent rect. 22 10
848 193.39 temperature 15 43200 > th dose independent rect. 24 8
856 193.40 temperature 15 43200 < th dose independent rect. 5 23
861 193.41 temperature 15 43200 < th dose independent no NA NA
875 193.43 humidity 50 1440 > th dose independent rect. 6 6
922 193.50 temperature 15 43200 > th dose independent rect. 6 22
927 193.51 temperature 15 43200 > th dose independent rect. 22 18
929 193.51 temperature 15 43200 > th dose independent rect. 22 20