BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0116800 Os10g0116800|AK110804
(335 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14700.1 | chr1:5058680-5060988 FORWARD LENGTH=367 365 e-101
AT2G01890.1 | chr2:396985-399168 REVERSE LENGTH=336 357 4e-99
AT1G25230.1 | chr1:8840474-8842298 REVERSE LENGTH=340 353 8e-98
AT3G17790.1 | chr3:6089779-6090988 FORWARD LENGTH=339 349 2e-96
AT2G01880.1 | chr2:391563-393967 REVERSE LENGTH=329 338 3e-93
>AT1G14700.1 | chr1:5058680-5060988 FORWARD LENGTH=367
Length = 366
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 165/298 (55%), Positives = 217/298 (72%), Gaps = 2/298 (0%)
Query: 21 ATAELTRHEHPVAAGAPLRLLVVGDWGRKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNF 80
+TAEL R P + LV+GDWGR+G YNQ++VA QMG++ E+ +IDFV+STGDNF
Sbjct: 57 STAELRRLLQPSKTDGTVSFLVIGDWGRRGSYNQSQVALQMGEIGEKLDIDFVISTGDNF 116
Query: 81 LENGLAGVDDMAFHDSFMDVYTAQSLHKPWYLVLGNHDYRGNVLAQIDPALRKIDSRFIC 140
+NGL + D F DSF ++YTA SL KPWY VLGNHDYRG+V AQ+ P LR +D+R++C
Sbjct: 117 YDNGLTSLHDPLFQDSFTNIYTAPSLQKPWYSVLGNHDYRGDVRAQLSPMLRALDNRWVC 176
Query: 141 MRSFIVSAGIVDFFFVDTTPFQLQYWTDPGEDHYDWRGVAPRDAYIANLLEDVDAAMKKS 200
MRSFIV+A IVD FFVDTTPF +Y+ P + YDW GV PR Y+ NLL+++D A+++S
Sbjct: 177 MRSFIVNAEIVDLFFVDTTPFVDKYFIQPNKHVYDWSGVLPRQTYLNNLLKELDVALRES 236
Query: 201 TATWKIAVGHHTMRSVSAHGDTQXXXXXXXPVLKENGVDFYINGHDHCLEHISSRNSPIQ 260
A WKI +GHHT++S HG+T P+L+ N VD Y+NGHDHCLEHISS +S IQ
Sbjct: 237 VAKWKIVIGHHTIKSAGHHGNTIELEKHLLPILQANEVDLYVNGHDHCLEHISSVDSNIQ 296
Query: 261 YFTSGGGSKAWRG--IFQQNEDKLQFFYDGQGFLSLELSENRARFAFYDVFGEALYHW 316
+ TSGGGSKAW+G + ++++F+YDGQGF+S+ +SE R FYDVFG L+HW
Sbjct: 297 FMTSGGGSKAWKGGDVNYVEPEEMRFYYDGQGFMSVHVSEAELRVVFYDVFGHVLHHW 354
>AT2G01890.1 | chr2:396985-399168 REVERSE LENGTH=336
Length = 335
Score = 357 bits (916), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 168/301 (55%), Positives = 214/301 (71%), Gaps = 1/301 (0%)
Query: 21 ATAELTRHEHPVAAGAPLRLLVVGDWGRKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNF 80
+TAEL R P L LVVGDWGR+G YNQ++VA QMGK+ ++ IDF++STGDNF
Sbjct: 28 STAELPRFVQPPEPDGSLSFLVVGDWGRRGSYNQSQVALQMGKIGKDLNIDFLISTGDNF 87
Query: 81 LENGLAGVDDMAFHDSFMDVYTAQSLHKPWYLVLGNHDYRGNVLAQIDPALRKIDSRFIC 140
++G+ D F DSF ++YTA SL KPWY VLGNHDYRGNV AQ+ P LR +D R+IC
Sbjct: 88 YDDGIISPYDSQFQDSFTNIYTATSLQKPWYNVLGNHDYRGNVYAQLSPILRDLDCRWIC 147
Query: 141 MRSFIVSAGIVDFFFVDTTPFQLQYWTDPGEDHYDWRGVAPRDAYIANLLEDVDAAMKKS 200
+RS++V+A IVD FFVDTTPF +Y+ +P + YDWRGV PR+ Y+ +LL DVD A+++S
Sbjct: 148 LRSYVVNAEIVDIFFVDTTPFVDRYFDEPKDHVYDWRGVLPRNKYLNSLLTDVDVALQES 207
Query: 201 TATWKIAVGHHTMRSVSAHGDTQXXXXXXXPVLKENGVDFYINGHDHCLEHISSRNSPIQ 260
A WKI VGHHT++S HG+T P+L+ N VD YINGHDHCLEHISS NS IQ
Sbjct: 208 MAKWKIVVGHHTIKSAGHHGNTIELEKQLLPILEANEVDLYINGHDHCLEHISSINSGIQ 267
Query: 261 YFTSGGGSKAWRG-IFQQNEDKLQFFYDGQGFLSLELSENRARFAFYDVFGEALYHWSFS 319
+ TSGGGSKAW+G + N +++F+YDGQGF+S+ SE R FYD G L+ WS
Sbjct: 268 FMTSGGGSKAWKGDVNDWNPQEMRFYYDGQGFMSVYTSEAELRVVFYDGLGHVLHRWSTL 327
Query: 320 K 320
K
Sbjct: 328 K 328
>AT1G25230.1 | chr1:8840474-8842298 REVERSE LENGTH=340
Length = 339
Score = 353 bits (906), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 158/299 (52%), Positives = 213/299 (71%), Gaps = 1/299 (0%)
Query: 23 AELTRHEHPVAAGAPLRLLVVGDWGRKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLE 82
AEL +H + LV+GDWGR G YNQ++VA QMG++ EE +I+FVVSTGDN +
Sbjct: 31 AELATVQHAPNPDGSISFLVIGDWGRHGLYNQSQVALQMGRIGEEMDINFVVSTGDNIYD 90
Query: 83 NGLAGVDDMAFHDSFMDVYTAQSLHKPWYLVLGNHDYRGNVLAQIDPALRKIDSRFICMR 142
NG+ +DD AF SF ++YT+ SL KPWYLVLGNHDYRG+V AQ+ P LR +DSR+ICMR
Sbjct: 91 NGMKSIDDPAFQLSFSNIYTSPSLQKPWYLVLGNHDYRGDVEAQLSPILRSMDSRWICMR 150
Query: 143 SFIVSAGIVDFFFVDTTPFQLQYWTDPGEDHYDWRGVAPRDAYIANLLEDVDAAMKKSTA 202
SFIV A I + FFVDTTPF Y+ P + YDW GV+PR +Y+ +L +++ +++S+A
Sbjct: 151 SFIVDAEIAELFFVDTTPFVDAYFLSPQDQTYDWSGVSPRKSYLQTILTELEMGLRESSA 210
Query: 203 TWKIAVGHHTMRSVSAHGDTQXXXXXXXPVLKENGVDFYINGHDHCLEHISSRNSPIQYF 262
WKI VGHH ++S S HG+T+ P+L+ N VD Y+NGHDHCL+HIS+ SPIQ+
Sbjct: 211 KWKIVVGHHAIKSASIHGNTKELESLLLPILEANKVDLYMNGHDHCLQHISTSQSPIQFL 270
Query: 263 TSGGGSKAWRGIFQ-QNEDKLQFFYDGQGFLSLELSENRARFAFYDVFGEALYHWSFSK 320
TSGGGSKAWRG + + ++FFYDGQGF+S++++ + FYDV G +L+ W SK
Sbjct: 271 TSGGGSKAWRGYYNWTTPEDMKFFYDGQGFMSVKITRSELSVVFYDVSGNSLHKWDTSK 329
>AT3G17790.1 | chr3:6089779-6090988 FORWARD LENGTH=339
Length = 338
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 162/307 (52%), Positives = 209/307 (68%), Gaps = 3/307 (0%)
Query: 21 ATAELTRHEHPVAAGAPLRLLVVGDWGRKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNF 80
+ EL R P + + +V+GDWGR+G +NQ+ VA QMGK+ E+ ++DFVVSTGDNF
Sbjct: 29 SNGELQRFIEPAKSDGSVSFIVIGDWGRRGSFNQSLVAYQMGKIGEKIDLDFVVSTGDNF 88
Query: 81 LENGLAGVDDMAFHDSFMDVYTAQSLHKPWYLVLGNHDYRGNVLAQIDPALRKIDSRFIC 140
+NGL D F SF ++YTA SL K WY VLGNHDYRG+ AQ+ LR+IDSR+IC
Sbjct: 89 YDNGLFSEHDPNFEQSFSNIYTAPSLQKQWYSVLGNHDYRGDAEAQLSSVLREIDSRWIC 148
Query: 141 MRSFIVSAGIVDFFFVDTTPFQLQYWTDPGEDHYDWRGVAPRDAYIANLLEDVDAAMKKS 200
+RSF+V A +V+ FFVDTTPF +Y+T+ YDWR V R++Y+ LL D++ ++K S
Sbjct: 149 LRSFVVDAELVEMFFVDTTPFVKEYYTEADGHSYDWRAVPSRNSYVKALLRDLEVSLKSS 208
Query: 201 TATWKIAVGHHTMRSVSAHGDTQXXXXXXXPVLKENGVDFYINGHDHCLEHISSRNSPIQ 260
A WKI VGHH MRS+ HGDT+ P+LKENGVD Y+NGHDHCL+H+S +SPIQ
Sbjct: 209 KARWKIVVGHHAMRSIGHHGDTKELNEELLPILKENGVDLYMNGHDHCLQHMSDEDSPIQ 268
Query: 261 YFTSGGGSKAWRGIFQQ---NEDKLQFFYDGQGFLSLELSENRARFAFYDVFGEALYHWS 317
+ TSG GSKAWRG N L+F+YDGQGF+S + + A FYDVFGE L+ W
Sbjct: 269 FLTSGAGSKAWRGDINPVTINPKLLKFYYDGQGFMSARFTHSDAEIVFYDVFGEILHKWV 328
Query: 318 FSKANLQ 324
SK L
Sbjct: 329 TSKQLLH 335
>AT2G01880.1 | chr2:391563-393967 REVERSE LENGTH=329
Length = 328
Score = 338 bits (867), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 164/303 (54%), Positives = 213/303 (70%), Gaps = 4/303 (1%)
Query: 21 ATAELTRHEHPVA--AGAPLRLLVVGDWGRKGGYNQTRVAEQMGKVAEETEIDFVVSTGD 78
A ++L R +HPV + L LV+GDWGRKGG+NQ+ VA QMG V E+ +IDFV+S GD
Sbjct: 22 ALSKLERLKHPVKKKSDGSLSFLVIGDWGRKGGFNQSLVAHQMGVVGEKLDIDFVISVGD 81
Query: 79 NFLENGLAGVDDMAFHDSFMDVYTAQSLHKPWYLVLGNHDYRGNVLAQIDPALRKIDSRF 138
NF ++GL GV+D +F SF +YT SL K WY VLGNHDYRGNV AQ+ L + D R+
Sbjct: 82 NFYDDGLKGVNDPSFEASFSHIYTHPSLQKQWYSVLGNHDYRGNVEAQLSKVLTQKDWRW 141
Query: 139 ICMRSFIVSAGIVDFFFVDTTPFQLQYWTDPGEDHYDWRGVAPRDAYIANLLEDVDAAMK 198
C RSF++S+G+VDFFF DT PF +Y+T+P + YDWR V PR+ YI+NLL D+D +K
Sbjct: 142 FCRRSFVLSSGMVDFFFADTNPFVEKYFTEPEDHTYDWRNVLPRNKYISNLLHDLDLEIK 201
Query: 199 KSTATWKIAVGHHTMRSVSAHGDTQXXXXXXXPVLKENGVDFYINGHDHCLEHISSRNSP 258
KS ATWK VGHH +++ HG TQ P+L+EN VD YINGHDHCL+HI S +
Sbjct: 202 KSRATWKFVVGHHGIKTAGNHGVTQELVDQLLPILEENKVDLYINGHDHCLQHIGS-HGK 260
Query: 259 IQYFTSGGGSKAWRGIFQQNEDK-LQFFYDGQGFLSLELSENRARFAFYDVFGEALYHWS 317
Q+ TSGGGSKAWRG Q + K L+ +YDGQGF+SL ++ ++A+F +YDV G L+ S
Sbjct: 261 TQFLTSGGGSKAWRGHVQPWDPKELKLYYDGQGFMSLHITHSKAKFIYYDVSGNVLHRSS 320
Query: 318 FSK 320
SK
Sbjct: 321 LSK 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,951,083
Number of extensions: 291409
Number of successful extensions: 563
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 5
Length of query: 335
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,392,385
Effective search space: 1980602860
Effective search space used: 1980602860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)