Os09g0570200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os09g0570200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.61 | 0.369 | 8.72 | -0.559 | 0.253 | 1.7 | 0.281 | 0.979 | -0.341 | 9.51 | 7.932 | 598 | -- | -- |
| 62.06 | 0.367 | 8.74 | -0.709 | 0.255 | 1.76 | -0.259 | -- | -0.396 | 7.14 | 8.634 | 513 | -- | -- |
| 61.75 | 0.366 | 8.72 | -0.576 | 0.257 | 1.71 | -- | 0.786 | -0.35 | 8.74 | 8.125 | 587 | -- | -- |
| 62.16 | 0.367 | 8.74 | -0.721 | 0.259 | 1.74 | -- | -- | -0.39 | 8.62 | 5.992 | 573 | -- | -- |
| 64.54 | 0.374 | 8.72 | -0.519 | -- | 1.51 | -- | 0.809 | -0.315 | -- | 8.399 | 496 | -- | -- |
| 95.68 | 0.459 | 8.69 | -0.309 | 0.22 | -- | 0.979 | -- | -0.131 | 17.1 | -- | -- | -- | -- |
| 98.02 | 0.464 | 8.69 | -0.309 | 0.232 | -- | -- | -- | -0.127 | 17.7 | -- | -- | -- | -- |
| 65.01 | 0.376 | 8.74 | -0.658 | -- | 1.53 | -- | -- | -0.352 | -- | 11 | 517 | -- | -- |
| 74.2 | 0.401 | 8.71 | -- | 0.167 | 1.43 | -- | -- | -0.269 | 8.11 | 11.94 | 496 | -- | -- |
| 100.8 | 0.469 | 8.69 | -0.316 | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
| 100.54 | 0.469 | 8.68 | -- | 0.236 | -- | -- | -- | -0.0922 | 17.7 | -- | -- | -- | -- |
| 74.29 | 0.401 | 8.72 | -- | -- | 1.07 | -- | -- | -0.251 | -- | 19.5 | 453 | -- | -- |
| 103.44 | 0.475 | 8.68 | -- | -- | -- | -- | -- | -0.097 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 2 | 57.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 16 | 57.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 46 | 58.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 49 | 58.95 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 64 | 59.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 81 | 59.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 97 | 59.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 119 | 60.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 261 | 61.95 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 322 | 62.40 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 344 | 62.53 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 409 | 62.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 450 | 63.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 453 | 63.17 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 471 | 63.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 488 | 63.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 502 | 63.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 508 | 63.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 515 | 63.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 548 | 63.64 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 573 | 63.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 584 | 63.73 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 702 | 63.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 749 | 63.96 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 889 | 64.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |